Specifically-expressed experiments

Gene ID	At5g15630
Gene name	IRX6
Functional description	Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
267.6	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618491	-	-	-
246.6	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618796	-	-	-
220.0	100.0	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
212.1	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618585	-	-	-
210.2	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618394	-	-	-
193.7	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618693	-	-	-
181.4	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618291	-	-	-
178.4	100.0	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
170.8	100.0	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
170.0	100.0	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
166.9	100.0	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
152.0	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617783	-	-	-
143.2	99.9	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
136.1	99.9	ArrayExpress	E-MEXP-1451-raw-cel-1585200362	-	-	-
133.9	99.9	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
122.9	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617890	-	-	-
111.3	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617695	-	-	-
95.3	99.9	GSM27362	WT Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
84.3	99.9	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
83.3	99.9	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
79.9	99.9	GSM128786	Somerville_1-9_stem-GC8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
75.6	99.9	GSM128785	Somerville_1-8_stem-GC7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
73.0	99.9	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
69.1	99.9	GSM133750	Turner_A-4-Turne-Mut-Base2_SLD	GSE5729	Role of COV in vascular patterning
68.0	99.9	ArrayExpress	E-MEXP-1451-raw-cel-1585200330	-	-	-
66.3	99.8	GSM131659	ATGE_28_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
62.3	99.8	GSM131660	ATGE_28_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
61.2	99.8	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
57.4	99.8	GSM131658	ATGE_28_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
47.3	99.8	ArrayExpress	E-MEXP-1451-raw-cel-1585200298	-	-	-
44.0	99.8	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
42.8	99.8	ArrayExpress	E-MEXP-265-raw-cel-414619106	-	-	-
40.5	99.8	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
39.0	99.8	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
38.6	99.8	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
38.0	99.8	GSM133749	Turner_A-3-Turne-Mut-Base1_SLD	GSE5729	Role of COV in vascular patterning
37.8	99.8	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
37.2	99.7	GSM133961	Fukuda_1-6_4B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.4	99.7	GSM128788	Somerville_1-11_stem-GH8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
26.0	99.7	GSM184920	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
25.7	99.7	ArrayExpress	E-MEXP-285-raw-cel-440783152	-	-	-
24.4	99.6	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
22.7	99.6	ArrayExpress	E-MEXP-265-raw-cel-414619001	-	-	-
22.0	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
21.1	99.6	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
18.6	99.5	GSM128787	Somerville_1-10_stem-GH7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
18.1	99.5	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
17.9	99.5	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
17.7	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.5	99.5	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
13.3	99.4	GSM131689	ATGE_77_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.8	99.3	GSM133960	Fukuda_1-5_4A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.5	99.3	GSM133818	Yang_1-3_young-pod_Rep2_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
12.0	99.3	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.4	99.3	GSM131690	ATGE_77_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.7	99.2	GSM131688	ATGE_77_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.6	99.2	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.4	99.2	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.0	99.2	GSM184893	Arabidopsis, root cells, columella root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.9	99.1	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	GSM133816	Yang_1-1_young-pod_Rep1_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
9.7	99.1	GSM266677	Arabidopsis, root cells, stele, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.4	99.1	ArrayExpress	E-MEXP-265-raw-cel-414618900	-	-	-
9.4	99.1	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

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