| Gene ID | At5g11260 |
| Gene name | HY5 (ELONGATED HYPOCOTYL 5) |
| Functional description | Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 76.4 | 99.9 | GSM284391 | Arabidopsis GPE3 | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 71.8 | 99.9 | GSM284390 | Arabidopsis GPE2 | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 43.6 | 99.8 | ArrayExpress | E-MEXP-1112-raw-cel-1590665793 | - | - | - |
| 43.1 | 99.8 | GSM284388 | Arabidopsis GMPE1 | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 42.4 | 99.8 | GSM131182 | AtGen_D-14_1-AS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 41.5 | 99.8 | GSM131181 | AtGen_D-13_1-BS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 41.2 | 99.8 | GSM131183 | AtGen_D-15_1-US_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 41.0 | 99.8 | GSM131178 | AtGen_D-10_1-FS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 40.4 | 99.8 | GSM184556 | Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 | GSE7631 | Cell-specific nitrogen responses in the Arabidopsis root | |
| 40.4 | 99.8 | GSM131198 | AtGen_D-32_2-WS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 39.6 | 99.8 | ArrayExpress | E-MEXP-1112-raw-cel-1590666001 | - | - | - |
| 39.1 | 99.8 | GSM131196 | AtGen_D-30_2-AS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 38.1 | 99.8 | GSM291024 | root - 08% oxygen - 48h - A | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 36.4 | 99.7 | GSM131212 | AtGen_D-46_3-AS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 35.7 | 99.7 | GSM131216 | AtGen_D-26_1-FS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 32.5 | 99.7 | GSM131194 | AtGen_D-28_2-RS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 32.1 | 99.7 | GSM131197 | AtGen_D-31_2-US_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 32.0 | 99.7 | GSM131214 | AtGen_D-48_3-WS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 30.4 | 99.7 | GSM131170 | AtGen_D-2_1-FL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 27.7 | 99.7 | GSM184551 | Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 | GSE7631 | Cell-specific nitrogen responses in the Arabidopsis root | |
| 27.3 | 99.7 | GSM131180 | AtGen_D-12_1-RS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 26.4 | 99.7 | GSM131200 | AtGen_D-34_3-FL_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 26.3 | 99.7 | GSM131193 | AtGen_D-27_2-PS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 25.9 | 99.7 | GSM131179 | AtGen_D-11_1-PS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 25.9 | 99.7 | GSM131184 | AtGen_D-16_1-WS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 25.1 | 99.6 | ArrayExpress | E-MEXP-1112-raw-cel-1590666053 | - | - | - |
| 23.6 | 99.6 | GSM311278 | Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 | GSE12402 | Expression data from Arabidopsis seed compartments at the pre-globular stage | |
| 22.6 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661572992 | - | - | - |
| 22.5 | 99.6 | GSM133962 | Fukuda_1-7_6A_Rep1_ATH1 | GSE5748 | In vitro tracheary element transdifferentiation of Col-0 suspension cells. | |
| 22.2 | 99.6 | GSM131208 | AtGen_D-42_3-FS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 22.0 | 99.6 | GSM131210 | AtGen_D-44_3-RS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 21.4 | 99.6 | GSM131195 | AtGen_D-29_2-BS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 21.1 | 99.6 | GSM131209 | AtGen_D-43_3-PS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 20.8 | 99.6 | GSM131394 | AtGen_6-7222_UV-Bstress-Roots-1.0h_Rep2 | GSE5626 | AtGenExpress: Stress Treatments (UV-B stress) | |
| 20.5 | 99.6 | GSM311288 | Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 | GSE12403 | Expression data from Arabidopsis seed compartments at the linear-cotyledon stage | |
| 20.5 | 99.6 | GSM131211 | AtGen_D-45_3-BS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 20.1 | 99.6 | ArrayExpress | E-MEXP-1112-raw-cel-1590665845 | - | - | - |
| 20.1 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661572978 | - | - | - |
| 19.8 | 99.6 | ArrayExpress | E-MEXP-828-raw-cel-1156922613 | - | - | - |
| 19.6 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661573160 | - | - | - |
| 19.5 | 99.6 | ArrayExpress | E-MEXP-1112-raw-cel-1590665585 | - | - | - |
| 19.3 | 99.6 | GSM133963 | Fukuda_1-8_6B_Rep2_ATH1 | GSE5748 | In vitro tracheary element transdifferentiation of Col-0 suspension cells. | |
| 19.2 | 99.6 | GSM131173 | AtGen_D-5_1-BL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 19.1 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661572952 | - | - | - |
| 18.7 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661573005 | - | - | - |
| 18.6 | 99.5 | ArrayExpress | E-MEXP-828-raw-cel-1156922572 | - | - | - |
| 18.2 | 99.5 | GSM291119 | root - 21% oxygen - 48h - A | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 17.9 | 99.5 | GSM131185 | AtGen_D-18_2-FL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.8 | 99.5 | GSM131213 | AtGen_D-47_3-US_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.8 | 99.5 | GSM131393 | AtGen_6-7221_UV-Bstress-Roots-1.0h_Rep1 | GSE5626 | AtGenExpress: Stress Treatments (UV-B stress) | |
| 17.6 | 99.5 | GSM131203 | AtGen_D-37_3-BL_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.3 | 99.5 | ArrayExpress | E-MEXP-449-raw-cel-676423362 | - | - | - |
| 17.2 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661573018 | - | - | - |
| 17.1 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661572965 | - | - | - |
| 17.0 | 99.5 | ArrayExpress | E-MEXP-1112-raw-cel-1590665377 | - | - | - |
| 16.1 | 99.5 | ArrayExpress | E-MEXP-828-raw-cel-1156922296 | - | - | - |
| 15.2 | 99.4 | ArrayExpress | E-MEXP-828-raw-cel-1156922595 | - | - | - |
| 14.7 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661573173 | - | - | - |
| 14.2 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661573186 | - | - | - |
| 14.1 | 99.4 | GSM284389 | Arabidopsis GMPE2 | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 13.3 | 99.4 | GSM133811 | Diamond_A-4-Diamo-fum_SLD | GSE5735 | Identification of Core Genes Regulating Plant Programmed Cell Death (PCD) | |
| 12.8 | 99.3 | ArrayExpress | E-MEXP-550-raw-cel-871342382 | - | - | - |
| 12.4 | 99.3 | ArrayExpress | E-MEXP-1112-raw-cel-1590665429 | - | - | - |
| 12.4 | 99.3 | ArrayExpress | E-MEXP-1797-raw-cel-1669768066 | - | - | - |
| 12.3 | 99.3 | ArrayExpress | E-MEXP-1112-raw-cel-1590665637 | - | - | - |
| 12.3 | 99.3 | GSM133810 | Diamond_A-3-Diamo-fum_SLD | GSE5735 | Identification of Core Genes Regulating Plant Programmed Cell Death (PCD) | |
| 12.0 | 99.3 | ArrayExpress | E-MEXP-828-raw-cel-1156922318 | - | - | - |
| 11.9 | 99.3 | GSM284386 | Arabidopsis GSUS3 | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 11.6 | 99.3 | GSM197141 | wt_2 with array type ATH1 from Affymetrix | GSE7961 | affy_aba_ath1-Characterization of aba3-1 suppressor mutants | |
| 11.4 | 99.3 | GSM253652 | Ler 2 | GSE10039 | Low_Mo_Arabidopsis_mapping_MOT1 | |
| 11.2 | 99.2 | GSM311277 | Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 | GSE12402 | Expression data from Arabidopsis seed compartments at the pre-globular stage | |
| 10.9 | 99.2 | GSM134775 | Col-0_5day_+lincomycin_rep1 | GSE5770 | col0,gun1,abi4-102, w/wo lincomycin | |
| 10.9 | 99.2 | ArrayExpress | E-MEXP-557-raw-cel-879731502 | - | - | - |
| 10.8 | 99.2 | GSM133813 | Diamond_A-2-Diamo-met_SLD | GSE5735 | Identification of Core Genes Regulating Plant Programmed Cell Death (PCD) | |
| 10.5 | 99.2 | GSM131188 | AtGen_D-21_2-BL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 10.5 | 99.2 | ArrayExpress | E-MEXP-828-raw-cel-1156922987 | - | - | - |
| 10.4 | 99.2 | ArrayExpress | E-MEXP-828-raw-cel-1156922485 | - | - | - |
| 10.3 | 99.2 | ArrayExpress | E-MEXP-828-raw-cel-1156922553 | - | - | - |
| 10.2 | 99.2 | GSM131565 | ATGE_94_B | GSE5631 | AtGenExpress: Developmental series (roots) | |
| 10.2 | 99.2 | GSM253650 | Ler 3 | GSE10039 | Low_Mo_Arabidopsis_mapping_MOT1 | |
| 10.0 | 99.2 | GSM142815 | SS002_ATH1_A7-smith-13h | GSE6174 | Gene expression and carbohydrate metabolism through the diurnal cycle | |
| 10.0 | 99.2 | ArrayExpress | E-MEXP-828-raw-cel-1156922891 | - | - | - |
| 9.9 | 99.1 | ArrayExpress | E-MEXP-550-raw-cel-871342391 | - | - | - |
| 9.9 | 99.1 | GSM133893 | Schroeder_1-9_JS46-starve-48h_Rep1_ATH1 | GSE5744 | Response to potassium starvation in roots | |
| 9.8 | 99.1 | GSM131391 | AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 | GSE5626 | AtGenExpress: Stress Treatments (UV-B stress) | |
| 9.8 | 99.1 | ArrayExpress | E-MEXP-828-raw-cel-1156922708 | - | - | - |
| 9.8 | 99.1 | GSM133892 | Schroeder_1-6_JS43-control-96h_Rep1_ATH1 | GSE5744 | Response to potassium starvation in roots | |
| 9.7 | 99.1 | ArrayExpress | E-MEXP-828-raw-cel-1156922438 | - | - | - |
| 9.6 | 99.1 | GSM142663 | NE001_ATH1_A1-Evans-w20 | GSE6154 | Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis | |
| 9.6 | 99.1 | GSM319208 | Dark-grown WT control (vector#1) | GSE12729 | Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings | |
| 9.3 | 99.1 | GSM197146 | S82-2_2 with array type ATH1 from Affymetrix | GSE7961 | affy_aba_ath1-Characterization of aba3-1 suppressor mutants | |
| 9.3 | 99.1 | ArrayExpress | E-MEXP-550-raw-cel-871342409 | - | - | - |
| 9.1 | 99.1 | GSM284387 | Arabidopsis GSUS4b | GSE11262 | Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage. | |
| 9.1 | 99.1 | GSM131454 | AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 | GSE5628 | AtGenExpress: Stress Treatments (Heat stress) | |
| 9.1 | 99.1 | GSM131564 | ATGE_94_A | GSE5631 | AtGenExpress: Developmental series (roots) | |
| 9.1 | 99.1 | GSM133122 | S0_12H_B | GSE5688 | AtGenExpress: Response to sulfate limitation | |
| 9.1 | 99.1 | GSM131392 | AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2 | GSE5626 | AtGenExpress: Stress Treatments (UV-B stress) | |
| 8.8 | 99.0 | GSM133965 | Fukuda_1-10_8B_Rep2_ATH1 | GSE5748 | In vitro tracheary element transdifferentiation of Col-0 suspension cells. | |
| 8.6 | 99.0 | GSM197144 | S15-118_2 with array type ATH1 from Affymetrix | GSE7961 | affy_aba_ath1-Characterization of aba3-1 suppressor mutants | |
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