CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g06320

Gene name NHL3

Functional description encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.2 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
40.8 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
39.2 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
38.8 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273144 - - -
35.4 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
26.9 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273252 - - -
26.8 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
24.9 99.6 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
24.5 99.6 ArrayExpress E-ATMX-33-raw-cel-1562596241 - - -
23.9 99.6 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
21.5 99.6 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
20.3 99.6 ArrayExpress E-ATMX-33-raw-cel-1562596197 - - -
19.6 99.6 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
18.4 99.5 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
18.3 99.5 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
16.8 99.5 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
16.1 99.5 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
16.0 99.5 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
16.0 99.5 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
15.9 99.5 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
15.7 99.5 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
15.3 99.4 ArrayExpress E-MEXP-546-raw-cel-863289476 - - -
14.1 99.4 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.9 99.3 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
12.8 99.3 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.2 99.3 ArrayExpress E-MEXP-546-raw-cel-863289532 - - -
12.1 99.3 ArrayExpress E-MEXP-173-raw-cel-357965520 - - -
11.9 99.3 ArrayExpress E-MEXP-1443-raw-cel-1581869632 - - -
11.8 99.3 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
11.7 99.3 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.2 99.2 GSM142847 MG001_ATH1_A28-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
10.9 99.2 GSM133705 Short_1-1_ozone_Rep1_ATH1 GSE5722 Functional Genomics of Ozone Stress in Arabidopsis.
10.7 99.2 ArrayExpress E-MEXP-546-raw-cel-863289424 - - -
10.4 99.2 ArrayExpress E-MEXP-1443-raw-cel-1581869863 - - -
10.4 99.2 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
10.2 99.2 GSM244454 Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.1 99.2 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
9.8 99.1 ArrayExpress E-MEXP-546-raw-cel-863289450 - - -
9.3 99.1 ArrayExpress E-MEXP-546-raw-cel-863289506 - - -
9.1 99.1 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
9.1 99.1 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.1 99.1 ArrayExpress E-MEXP-546-raw-cel-863289404 - - -
9.0 99.1 ArrayExpress E-ATMX-25-raw-cel-1441077482 - - -
9.0 99.1 GSM142836 MG001_ATH1_A15-Torres-4N6 GSE6176 Impact of Type III effectors on plant defense responses
8.9 99.0 GSM128669 Underwood_1-22_hrpAfliC-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.9 99.0 GSM128673 Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.8 99.0 ArrayExpress E-MEXP-739-raw-cel-1099467339 - - -
8.7 99.0 GSM157318 Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
8.7 99.0 GSM142854 MG001_ATH1_A7-Torres-3N1 GSE6176 Impact of Type III effectors on plant defense responses

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.2	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
40.8	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
39.2	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
38.8	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
35.4	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
26.9	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
26.8	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
24.9	99.6	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
24.5	99.6	ArrayExpress	E-ATMX-33-raw-cel-1562596241	-	-	-
23.9	99.6	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
21.5	99.6	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
20.3	99.6	ArrayExpress	E-ATMX-33-raw-cel-1562596197	-	-	-
19.6	99.6	GSM244448	Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
18.4	99.5	GSM184917	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
18.3	99.5	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
16.8	99.5	GSM184916	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
16.1	99.5	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
16.0	99.5	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
16.0	99.5	GSM142838	MG001_ATH1_A17-Torres-6N3	GSE6176	Impact of Type III effectors on plant defense responses
15.9	99.5	GSM266672	Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
15.7	99.5	GSM244455	Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
15.3	99.4	ArrayExpress	E-MEXP-546-raw-cel-863289476	-	-	-
14.1	99.4	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.9	99.3	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.8	99.3	GSM266674	Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.2	99.3	ArrayExpress	E-MEXP-546-raw-cel-863289532	-	-	-
12.1	99.3	ArrayExpress	E-MEXP-173-raw-cel-357965520	-	-	-
11.9	99.3	ArrayExpress	E-MEXP-1443-raw-cel-1581869632	-	-	-
11.8	99.3	GSM142837	MG001_ATH1_A16-Torres-6N1	GSE6176	Impact of Type III effectors on plant defense responses
11.7	99.3	GSM128664	Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.2	99.2	GSM142847	MG001_ATH1_A28-Torres-9N1	GSE6176	Impact of Type III effectors on plant defense responses
10.9	99.2	GSM133705	Short_1-1_ozone_Rep1_ATH1	GSE5722	Functional Genomics of Ozone Stress in Arabidopsis.
10.7	99.2	ArrayExpress	E-MEXP-546-raw-cel-863289424	-	-	-
10.4	99.2	ArrayExpress	E-MEXP-1443-raw-cel-1581869863	-	-	-
10.4	99.2	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
10.2	99.2	GSM244454	Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.1	99.2	GSM142833	MG001_ATH1_A10-Torres-5N1	GSE6176	Impact of Type III effectors on plant defense responses
9.8	99.1	ArrayExpress	E-MEXP-546-raw-cel-863289450	-	-	-
9.3	99.1	ArrayExpress	E-MEXP-546-raw-cel-863289506	-	-	-
9.1	99.1	GSM142835	MG001_ATH1_A13-Torres-4N1	GSE6176	Impact of Type III effectors on plant defense responses
9.1	99.1	GSM184898	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.1	99.1	ArrayExpress	E-MEXP-546-raw-cel-863289404	-	-	-
9.0	99.1	ArrayExpress	E-ATMX-25-raw-cel-1441077482	-	-	-
9.0	99.1	GSM142836	MG001_ATH1_A15-Torres-4N6	GSE6176	Impact of Type III effectors on plant defense responses
8.9	99.0	GSM128669	Underwood_1-22_hrpAfliC-10e8-7h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.9	99.0	GSM128673	Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.8	99.0	ArrayExpress	E-MEXP-739-raw-cel-1099467339	-	-	-
8.7	99.0	GSM157318	Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
8.7	99.0	GSM142854	MG001_ATH1_A7-Torres-3N1	GSE6176	Impact of Type III effectors on plant defense responses

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Gene ID	At5g06320
Gene name	NHL3
Functional description	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.