CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At5g01560

Gene name LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3)

Functional description Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
580.2 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273252 - - -
561.4 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273144 - - -
403.3 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
260.3 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
257.0 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
160.9 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
98.1 99.9 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
73.5 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
62.4 99.8 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
57.0 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
53.0 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
51.8 99.8 ArrayExpress E-NASC-76-raw-cel-1359878900 - - -
50.5 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
49.0 99.8 GSM39206 Col_Chitin4 GSE2169 rre1 and rre2 mutants
47.2 99.8 GSM39204 Col_Chitin2 GSE2169 rre1 and rre2 mutants
43.8 99.8 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
42.5 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
41.7 99.8 GSM39205 Col_Chitin3 GSE2169 rre1 and rre2 mutants
40.7 99.8 GSM39203 Col_Chitin1 GSE2169 rre1 and rre2 mutants
39.7 99.8 ArrayExpress E-NASC-76-raw-cel-1359878976 - - -
38.1 99.8 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
37.6 99.7 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
36.3 99.7 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
36.2 99.7 ArrayExpress E-NASC-76-raw-cel-1359879106 - - -
34.5 99.7 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
33.7 99.7 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
33.6 99.7 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
32.6 99.7 ArrayExpress E-NASC-76-raw-cel-1359879158 - - -
32.5 99.7 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
31.6 99.7 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
26.9 99.7 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
23.6 99.6 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
23.5 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.5 99.6 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
19.8 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.4 99.6 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.7 99.5 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.2 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.2 99.5 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
18.0 99.5 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
17.9 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.1 99.5 ArrayExpress E-NASC-76-raw-cel-1359878951 - - -
17.1 99.5 ArrayExpress E-MEXP-807-raw-cel-1173272948 - - -
16.6 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.3 99.5 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.0 99.5 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
15.1 99.4 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.9 99.4 GSM131127 AtGen_B-13_1-6-4_REP1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.7 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.7 99.4 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
14.6 99.4 ArrayExpress E-MEXP-1094-raw-cel-1379507313 - - -
14.6 99.4 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.3 99.4 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
14.3 99.4 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7 99.4 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.2 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.0 99.4 ArrayExpress E-MEXP-1094-raw-cel-1379507273 - - -
12.5 99.3 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.7 99.3 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
11.3 99.3 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.2 99.2 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.8 99.2 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4 99.2 ArrayExpress E-NASC-76-raw-cel-1359879132 - - -
10.4 99.2 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.3 99.2 ArrayExpress E-MEXP-828-raw-cel-1156922342 - - -
10.3 99.2 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
10.2 99.2 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2 99.2 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
10.0 99.2 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.8 99.1 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6 99.1 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.0 99.1 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.8 99.0 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
580.2	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
561.4	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
403.3	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
260.3	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
257.0	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
160.9	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
98.1	99.9	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
73.5	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
62.4	99.8	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
57.0	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
53.0	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
51.8	99.8	ArrayExpress	E-NASC-76-raw-cel-1359878900	-	-	-
50.5	99.8	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
49.0	99.8	GSM39206	Col_Chitin4	GSE2169	rre1 and rre2 mutants
47.2	99.8	GSM39204	Col_Chitin2	GSE2169	rre1 and rre2 mutants
43.8	99.8	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
42.5	99.8	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
41.7	99.8	GSM39205	Col_Chitin3	GSE2169	rre1 and rre2 mutants
40.7	99.8	GSM39203	Col_Chitin1	GSE2169	rre1 and rre2 mutants
39.7	99.8	ArrayExpress	E-NASC-76-raw-cel-1359878976	-	-	-
38.1	99.8	GSM39212	RRE2_Chitin2	GSE2169	rre1 and rre2 mutants
37.6	99.7	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
36.3	99.7	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
36.2	99.7	ArrayExpress	E-NASC-76-raw-cel-1359879106	-	-	-
34.5	99.7	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
33.7	99.7	GSM226538	L8SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
33.6	99.7	GSM39211	RRE2_Chitin1	GSE2169	rre1 and rre2 mutants
32.6	99.7	ArrayExpress	E-NASC-76-raw-cel-1359879158	-	-	-
32.5	99.7	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
31.6	99.7	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
26.9	99.7	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
23.6	99.6	GSM142853	MG001_ATH1_A6-Torres-2N6	GSE6176	Impact of Type III effectors on plant defense responses
23.5	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.5	99.6	GSM142852	MG001_ATH1_A5-Torres-2N3	GSE6176	Impact of Type III effectors on plant defense responses
19.8	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.4	99.6	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.7	99.5	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.2	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.2	99.5	GSM142851	MG001_ATH1_A4-Torres-2N1	GSE6176	Impact of Type III effectors on plant defense responses
18.0	99.5	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
17.9	99.5	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.1	99.5	ArrayExpress	E-NASC-76-raw-cel-1359878951	-	-	-
17.1	99.5	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
16.6	99.5	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.3	99.5	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.0	99.5	GSM131139	AtGen_B-25_2-4-4_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
15.1	99.4	GSM131113	AtGen_B-41_3-6-4_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.9	99.4	GSM131127	AtGen_B-13_1-6-4_REP1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.7	99.4	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.7	99.4	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
14.6	99.4	ArrayExpress	E-MEXP-1094-raw-cel-1379507313	-	-	-
14.6	99.4	GSM131111	AtGen_B-39_3-4-4_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.3	99.4	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
14.3	99.4	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7	99.4	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.2	99.4	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.0	99.4	ArrayExpress	E-MEXP-1094-raw-cel-1379507273	-	-	-
12.5	99.3	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.7	99.3	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
11.3	99.3	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.2	99.2	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.8	99.2	GSM184493	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4	99.2	ArrayExpress	E-NASC-76-raw-cel-1359879132	-	-	-
10.4	99.2	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.3	99.2	ArrayExpress	E-MEXP-828-raw-cel-1156922342	-	-	-
10.3	99.2	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
10.2	99.2	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2	99.2	GSM142829	GM001_ATH1_A11-Torres-5N3	GSE6176	Impact of Type III effectors on plant defense responses
10.0	99.2	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.8	99.1	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6	99.1	GSM128686	Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.0	99.1	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.8	99.0	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

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Gene ID	At5g01560
Gene name	LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3)
Functional description	Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.