CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At4g39260

Gene name GR-RBP8

Functional description Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.6 99.5 GSM131462 AtGen_6-9422_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
15.5 99.5 GSM131461 AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
11.4 99.3 GSM290759 root - 01% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
11.2 99.2 ArrayExpress E-MEXP-828-raw-cel-1156922809 - - -
11.0 99.2 GSM291124 root - 21% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.7 99.2 ArrayExpress E-MEXP-828-raw-cel-1156922438 - - -
10.6 99.2 GSM291098 root - 08% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.5 99.2 GSM131430 AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
10.1 99.2 GSM131374 AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
10.0 99.2 GSM290828 root - 04% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.5 99.1 ArrayExpress E-MEXP-828-raw-cel-1156922553 - - -
9.3 99.1 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2 99.1 ArrayExpress E-MEXP-828-raw-cel-1156922613 - - -
8.9 99.0 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.9 99.0 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8 99.0 ArrayExpress E-MEXP-828-raw-cel-1156922634 - - -
8.3 99.0 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.1 98.9 GSM131353 AtGen_6-4521_Droughtstress-Roots-12.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
8.0 98.9 GSM131349 AtGen_6-4421_Droughtstress-Roots-6.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
8.0 98.9 ArrayExpress E-MEXP-828-raw-cel-1156922368 - - -

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.5	GSM131462	AtGen_6-9422_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
15.5	99.5	GSM131461	AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
11.4	99.3	GSM290759	root - 01% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
11.2	99.2	ArrayExpress	E-MEXP-828-raw-cel-1156922809	-	-	-
11.0	99.2	GSM291124	root - 21% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.7	99.2	ArrayExpress	E-MEXP-828-raw-cel-1156922438	-	-	-
10.6	99.2	GSM291098	root - 08% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.5	99.2	GSM131430	AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
10.1	99.2	GSM131374	AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
10.0	99.2	GSM290828	root - 04% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.5	99.1	ArrayExpress	E-MEXP-828-raw-cel-1156922553	-	-	-
9.3	99.1	GSM142644	MC002_ATH1_A8.1-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	ArrayExpress	E-MEXP-828-raw-cel-1156922613	-	-	-
8.9	99.0	GSM142645	MC002_ATH1_A8.2-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.9	99.0	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8	99.0	ArrayExpress	E-MEXP-828-raw-cel-1156922634	-	-	-
8.3	99.0	GSM142632	MC002_ATH1_A4.1-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.1	98.9	GSM131353	AtGen_6-4521_Droughtstress-Roots-12.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
8.0	98.9	GSM131349	AtGen_6-4421_Droughtstress-Roots-6.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
8.0	98.9	ArrayExpress	E-MEXP-828-raw-cel-1156922368	-	-	-

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Gene ID	At4g39260
Gene name	GR-RBP8
Functional description	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).