| Gene ID | At4g38130 |
| Gene name | HD1 (HISTONE DEACETYLASE 1) |
| Functional description | Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 43.9 | 99.8 | ArrayExpress | E-MEXP-849-raw-cel-1181980982 | - | - | - |
| 39.8 | 99.8 | ArrayExpress | E-MEXP-849-raw-cel-1181980998 | - | - | - |
| 39.3 | 99.8 | ArrayExpress | E-MEXP-849-raw-cel-1181981038 | - | - | - |
| 31.1 | 99.7 | ArrayExpress | E-MEXP-849-raw-cel-1181981006 | - | - | - |
| 31.0 | 99.7 | ArrayExpress | E-MEXP-849-raw-cel-1181980990 | - | - | - |
| 29.9 | 99.7 | ArrayExpress | E-MEXP-849-raw-cel-1181981030 | - | - | - |
| 29.3 | 99.7 | ArrayExpress | E-MEXP-849-raw-cel-1181981022 | - | - | - |
| 28.4 | 99.7 | ArrayExpress | E-MEXP-849-raw-cel-1181981046 | - | - | - |
| 24.7 | 99.6 | ArrayExpress | E-MEXP-849-raw-cel-1181981014 | - | - | - |
| 23.5 | 99.6 | GSM133120 | RIKEN-YAMAUCHI2B | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 23.5 | 99.6 | GSM133119 | RIKEN-YAMAUCHI2A | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 13.4 | 99.4 | GSM242955 | Steroid day 1 (day1D1) | GSE9605 | Target genes of AGAMOUS during early flower development in Arabidopsis | |
| 12.1 | 99.3 | GSM242959 | Steroid day 3 (day3D1) | GSE9605 | Target genes of AGAMOUS during early flower development in Arabidopsis | |
| 10.8 | 99.2 | GSM242957 | Mock day 3 (day3E1) | GSE9605 | Target genes of AGAMOUS during early flower development in Arabidopsis | |
| 8.0 | 98.9 | ArrayExpress | E-MEXP-728-raw-cel-1062074409 | - | - | - |
| 7.9 | 98.9 | GSM311282 | Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 | GSE12402 | Expression data from Arabidopsis seed compartments at the pre-globular stage | |
| 7.8 | 98.9 | ArrayExpress | E-MEXP-728-raw-cel-1062074303 | - | - | - |
| 7.6 | 98.9 | GSM142591 | DB001_ATH1_A1-Brown-cal | GSE6148 | The trans-differentiation of cultured Arabidopsis cells | |
| 7.6 | 98.9 | GSM184931 | Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1 | GSE7642 | Time course expression analysis of the salt stress response in Arabidopsis roots | |
| 7.6 | 98.9 | GSM242958 | Mock day 3 (day3E2) | GSE9605 | Target genes of AGAMOUS during early flower development in Arabidopsis | |
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