Specifically-expressed experiments

Gene ID	At4g36380
Gene name	ROT3 (ROTUNDIFOLIA 3)
Functional description	Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
62.4	99.8	GSM131203	AtGen_D-37_3-BL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
53.6	99.8	GSM131170	AtGen_D-2_1-FL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
52.0	99.8	GSM131188	AtGen_D-21_2-BL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
49.0	99.8	GSM131173	AtGen_D-5_1-BL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
46.0	99.8	GSM131200	AtGen_D-34_3-FL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
41.3	99.8	GSM131187	AtGen_D-20_2-RL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
39.0	99.8	GSM131206	AtGen_D-40_3-WL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
38.1	99.8	GSM179963	Arabidopsis aux1 mutant roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
37.0	99.7	GSM131205	AtGen_D-39_3-UL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
33.7	99.7	GSM131185	AtGen_D-18_2-FL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
29.7	99.7	GSM131202	AtGen_D-36_3-RL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
28.5	99.7	GSM131176	AtGen_D-8_1-WL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
28.5	99.7	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.0	99.7	GSM131208	AtGen_D-42_3-FS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
27.9	99.7	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
27.4	99.7	GSM131171	AtGen_D-3_1-PL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
27.2	99.7	GSM131204	AtGen_D-38_3-AL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
27.1	99.7	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
27.1	99.7	GSM131175	AtGen_D-7_1-UL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
26.7	99.7	GSM131191	AtGen_D-24_2-WL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
25.6	99.7	GSM282693	arf2_brz_1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
25.4	99.6	GSM131169	AtGen_D-1_1-DL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
25.3	99.6	GSM67078	Arabidopsis_Ovary01	GSE3056	Arabidopsis Pollination Study
25.1	99.6	GSM179975	Arabidopsis ein2 mutant roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
24.4	99.6	GSM131210	AtGen_D-44_3-RS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
24.4	99.6	GSM282697	Col_BRZ_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
23.3	99.6	ArrayExpress	E-ATMX-31-raw-cel-1516948018	-	-	-
23.2	99.6	GSM131212	AtGen_D-46_3-AS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
22.9	99.6	GSM131216	AtGen_D-26_1-FS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
22.6	99.6	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
22.3	99.6	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
22.3	99.6	GSM179958	Arabidopsis roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
22.2	99.6	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
22.0	99.6	GSM131184	AtGen_D-16_1-WS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
21.9	99.6	GSM131209	AtGen_D-43_3-PS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
21.7	99.6	GSM131172	AtGen_D-4_1-RL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
21.5	99.6	GSM131177	AtGen_D-9_1-DS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.9	99.6	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.8	99.6	GSM179972	Arabidopsis roots, mock treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
20.6	99.6	GSM131179	AtGen_D-11_1-PS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.4	99.6	GSM282700	Col_mock_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
20.4	99.6	GSM131192	AtGen_D-25_2-DS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
20.2	99.6	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.2	99.6	GSM131198	AtGen_D-32_2-WS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
20.0	99.6	GSM131194	AtGen_D-28_2-RS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
19.5	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.3	99.6	GSM131195	AtGen_D-29_2-BS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
19.1	99.6	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
19.0	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.7	99.5	GSM131207	AtGen_D-41_3-DS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
18.5	99.5	GSM131215	AtGen_D-17_2-DL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
18.3	99.5	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
18.1	99.5	GSM131211	AtGen_D-45_3-BS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
17.9	99.5	ArrayExpress	E-ATMX-31-raw-cel-1516948001	-	-	-
17.9	99.5	GSM282703	arf2_brz_2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
17.6	99.5	GSM131193	AtGen_D-27_2-PS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.6	99.5	GSM131196	AtGen_D-30_2-AS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.5	99.5	GSM282699	Col_BRZ_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
17.5	99.5	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.2	99.5	GSM282701	Col_mock_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
17.1	99.5	GSM265433	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
16.5	99.5	GSM179967	Arabidopsis aux1 mutant roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
16.5	99.5	GSM131197	AtGen_D-31_2-US_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.5	99.5	GSM282698	Col_BRZ_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
15.9	99.5	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.8	99.5	GSM179959	Arabidopsis roots, air treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
15.8	99.5	GSM131181	AtGen_D-13_1-BS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
15.8	99.5	GSM292076	Wt, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
15.8	99.5	GSM292079	pif1-2, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
15.7	99.5	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.6	99.5	GSM131199	AtGen_D-33_3-DL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
15.4	99.5	GSM292078	Wt, dark sample, biological rep3	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
15.3	99.4	GSM131214	AtGen_D-48_3-WS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
15.0	99.4	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.6	99.4	ArrayExpress	E-ATMX-31-raw-cel-1516947984	-	-	-
14.4	99.4	GSM265412	Arabidopsis, whole roots, -Fe, replicate 2	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.0	99.4	GSM319209	Dark-grown WT control (vector#4)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
13.8	99.4	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
13.8	99.4	GSM265431	Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.4	99.4	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.2	99.4	GSM131213	AtGen_D-47_3-US_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
13.2	99.4	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
13.2	99.4	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
13.1	99.4	GSM282696	arf2_mock_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
13.0	99.4	GSM265430	Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.9	99.3	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
12.8	99.3	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
12.7	99.3	GSM265422	Arabidopsis, root, longitudinal zone 3, standard conditions, rep1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.6	99.3	GSM292077	Wt, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
12.6	99.3	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.5	99.3	GSM265432	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.3	99.3	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.2	99.3	GSM266671	Arabidopsis, root cells, cortex, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.1	99.3	GSM179961	Arabidopsis roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.0	99.3	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.0	99.3	GSM265413	Arabidopsis, whole roots, -Fe, replicate 3	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.9	99.3	GSM179960	Arabidopsis roots, ethylene treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.9	99.3	GSM184915	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.8	99.3	GSM179971	Arabidopsis roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
11.8	99.3	GSM184530	Stele root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.6	99.3	GSM265424	Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.3	99.3	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2	99.2	GSM266669	Arabidopsis, root cells, cortex, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
11.1	99.2	GSM179974	Arabidopsis roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.8	99.2	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.8	99.2	GSM265423	Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.7	99.2	ArrayExpress	E-MEXP-285-raw-cel-440783152	-	-	-
10.7	99.2	GSM184493	Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.6	99.2	GSM184913	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	ArrayExpress	E-MEXP-1784-raw-cel-1661572978	-	-	-
10.2	99.2	GSM157309	Gan_1-5_wildtype-nitrate-continuous(WNC)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
10.2	99.2	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.1	99.2	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.1	99.2	GSM260881	Yap_A2-AMF	GSE10323	Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
9.8	99.1	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6	99.1	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.6	99.1	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.5	99.1	GSM142755	MJ001_ATH1_A6-jones-RH-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.4	99.1	GSM67087	Arabidopsis_Stigma03	GSE3056	Arabidopsis Pollination Study
9.4	99.1	ArrayExpress	E-MEXP-1784-raw-cel-1661572965	-	-	-
9.3	99.1	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.3	99.1	GSM184498	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.2	99.1	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.9	99.0	GSM231197	wild-type at T0.5, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
8.8	99.0	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
8.7	99.0	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6	99.0	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.6	99.0	GSM10480	lec1-1 Cotyledon Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants

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