Specifically-expressed experiments

Gene ID	At4g27860
Gene name	integral membrane family protein
Functional description	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.1	99.8	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
36.9	99.7	GSM75518	slr-1 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
33.5	99.7	GSM75515	Col-0 6h MOCK replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
31.2	99.7	GSM133957	Fukuda_1-2_0B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
29.6	99.7	GSM128676	Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
26.7	99.7	GSM75514	Col-0 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
25.1	99.6	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
25.0	99.6	GSM131570	ATGE_98_A	GSE5631	AtGenExpress: Developmental series (roots)
23.8	99.6	GSM131564	ATGE_94_A	GSE5631	AtGenExpress: Developmental series (roots)
22.8	99.6	GSM128654	Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.3	99.6	GSM291119	root - 21% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
21.2	99.6	GSM291024	root - 08% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
21.1	99.6	GSM131572	ATGE_98_C	GSE5631	AtGenExpress: Developmental series (roots)
21.1	99.6	GSM75510	Col-0 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
18.8	99.5	GSM133139	S1500_4H_A	GSE5688	AtGenExpress: Response to sulfate limitation
18.2	99.5	GSM133122	S0_12H_B	GSE5688	AtGenExpress: Response to sulfate limitation
17.7	99.5	GSM133126	S0_2H_B	GSE5688	AtGenExpress: Response to sulfate limitation
17.4	99.5	GSM131574	ATGE_99_B	GSE5631	AtGenExpress: Developmental series (roots)
17.3	99.5	GSM133125	S0_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
17.2	99.5	GSM133128	S0_4H_B	GSE5688	AtGenExpress: Response to sulfate limitation
17.0	99.5	GSM133140	S1500_4H_B	GSE5688	AtGenExpress: Response to sulfate limitation
16.9	99.5	GSM128677	Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.9	99.5	GSM131565	ATGE_94_B	GSE5631	AtGenExpress: Developmental series (roots)
16.9	99.5	GSM131434	AtGen_6-8525_Woundingstress-Roots-12.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
16.5	99.5	GSM131573	ATGE_99_A	GSE5631	AtGenExpress: Developmental series (roots)
16.2	99.5	GSM131571	ATGE_98_B	GSE5631	AtGenExpress: Developmental series (roots)
15.8	99.5	GSM131433	AtGen_6-8524_Woundingstress-Roots-12.0h_Rep1	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
15.8	99.5	GSM75511	Col-0 6h MOCK replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
15.7	99.5	GSM133138	S1500_2H_B	GSE5688	AtGenExpress: Response to sulfate limitation
15.4	99.5	GSM131575	ATGE_99_C	GSE5631	AtGenExpress: Developmental series (roots)
15.2	99.4	ArrayExpress	E-MEXP-728-raw-cel-1062074684	-	-	-
15.1	99.4	GSM142673	SF001_ATH1_A3-Fille-ANGR4-12	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
14.9	99.4	GSM133130	S0_8H_B	GSE5688	AtGenExpress: Response to sulfate limitation
14.9	99.4	GSM131568	ATGE_95_B	GSE5631	AtGenExpress: Developmental series (roots)
14.9	99.4	GSM75519	slr-1 0h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
14.9	99.4	GSM290758	root - 01% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
14.6	99.4	GSM133134	S1500_12H_B	GSE5688	AtGenExpress: Response to sulfate limitation
14.5	99.4	GSM291023	root - 08% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
14.1	99.4	GSM291114	root - 21% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
13.9	99.4	GSM179973	Arabidopsis roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
13.8	99.4	GSM133121	S0_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
13.8	99.4	GSM131567	ATGE_95_A	GSE5631	AtGenExpress: Developmental series (roots)
13.7	99.4	GSM179978	Arabidopsis ein2 mutant roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
13.6	99.4	GSM299329	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
13.5	99.4	GSM133142	S1500_8H_B	GSE5688	AtGenExpress: Response to sulfate limitation
13.5	99.4	ArrayExpress	E-MEXP-1468-raw-cel-1591138985	-	-	-
13.1	99.4	GSM142672	SF001_ATH1_A2-Fille-WT-+dex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
12.7	99.3	GSM75516	slr-1 0h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
12.6	99.3	GSM131566	ATGE_94_C	GSE5631	AtGenExpress: Developmental series (roots)
12.5	99.3	GSM131569	ATGE_95_C	GSE5631	AtGenExpress: Developmental series (roots)
12.5	99.3	GSM299330	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
12.4	99.3	GSM128655	Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
12.3	99.3	GSM179977	Arabidopsis ein2 mutant roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.1	99.3	GSM299327	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
11.8	99.3	GSM131187	AtGen_D-20_2-RL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
11.6	99.3	GSM231201	chl1 at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.6	99.3	GSM133136	S1500_24H_B	GSE5688	AtGenExpress: Response to sulfate limitation
11.6	99.3	ArrayExpress	E-MEXP-1468-raw-cel-1591139018	-	-	-
11.5	99.3	GSM142671	SF001_ATH1_A1-Fille-WT-nodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
11.3	99.3	GSM133989	Birnbaum_1-22_gl2-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.1	99.2	GSM131206	AtGen_D-40_3-WL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
11.0	99.2	GSM133129	S0_8H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.9	99.2	GSM133124	S0_24H_B	GSE5688	AtGenExpress: Response to sulfate limitation
10.9	99.2	GSM179974	Arabidopsis roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.9	99.2	GSM131176	AtGen_D-8_1-WL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
10.8	99.2	GSM131202	AtGen_D-36_3-RL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.6	99.2	GSM75513	Col-0 2h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.6	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062242948	-	-	-
10.5	99.2	GSM265461	Arabidopsis, whole roots, standard conditions, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
10.4	99.2	GSM299332	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
10.4	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062242857	-	-	-
10.3	99.2	ArrayExpress	E-MEXP-711-raw-cel-1563002839	-	-	-
10.3	99.2	GSM237282	Root Selenate rep 1	GSE9311	Gene expression in roots and shoots of plants grown on selenate
10.2	99.2	GSM299331	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
10.2	99.2	GSM133133	S1500_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.2	99.2	GSM142670	SF002_ATH1_A8-Fille-ANGR4-12+dex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
10.1	99.2	GSM75517	slr-1 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.0	99.2	ArrayExpress	E-MEXP-791-raw-cel-1122937578	-	-	-
10.0	99.2	GSM142755	MJ001_ATH1_A6-jones-RH-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.9	99.1	GSM142674	SF002_ATH1_A5-Fille-WTnodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
9.9	99.1	GSM131354	AtGen_6-4522_Droughtstress-Roots-12.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
9.9	99.1	GSM299409	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.8	99.1	GSM131438	AtGen_6-8622_Woundingstress-Roots-24.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
9.7	99.1	GSM157336	Coates_1-8_ara1/2mut_Rep2_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
9.6	99.1	GSM266664	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.4	99.1	GSM299339	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.3	99.1	GSM184891	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.3	99.1	GSM299410	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.3	99.1	GSM131366	AtGen_6-5222_Genotoxicstress-Roots-1.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.2	99.1	GSM133137	S1500_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
9.2	99.1	GSM299340	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 2 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.1	99.1	GSM265466	Arabidopsis, whole roots, -Fe, 6 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
9.1	99.1	GSM179975	Arabidopsis ein2 mutant roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
9.1	99.1	GSM133306	RIKEN-NAKABAYASHI2B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
9.1	99.1	GSM131172	AtGen_D-4_1-RL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.1	99.1	GSM133135	S1500_24H_A	GSE5688	AtGenExpress: Response to sulfate limitation
9.1	99.1	GSM142669	SF002_ATH1_A7-Fille-ANGR4-12nodex	GSE6155	Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
9.0	99.1	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.0	99.1	GSM157335	Coates_1-7_Col-3_Rep2_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
9.0	99.1	GSM157329	Coates_1-1_Col-0_Rep1_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
8.9	99.0	GSM231195	wild-type at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
8.9	99.0	GSM299408	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
8.8	99.0	ArrayExpress	E-MEXP-828-raw-cel-1156922572	-	-	-
8.8	99.0	GSM231193	wild-type at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
8.8	99.0	GSM266662	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.7	99.0	GSM179971	Arabidopsis roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings

Back to the CoP portal site

Back to the KAGIANA project homepage