Specifically-expressed experiments

Gene ID At4g27030
Gene name small conjugating protein ligase
Functional description F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.599.7ArrayExpressE-MEXP-557-raw-cel-879731502---
29.099.7GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
28.799.7ArrayExpressEvans_2-2_col-WT-cold_ATH1---
27.999.7GSM131391AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
27.899.7ArrayExpressE-MEXP-550-raw-cel-871342418---
25.699.7ArrayExpressEvans_2-8_35s-FAD3-cold_ATH1---
24.499.6GSM131392AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
24.399.6ArrayExpressEvans_2-4_fab1-mut-cold_ATH1---
23.899.6ArrayExpressEvans_2-10_col-aeq-cold_ATH1---
23.499.6ArrayExpressE-MEXP-550-raw-cel-871342427---
23.199.6GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
22.699.6ArrayExpressEvans_2-12_fab3-7-8-mut-aeq-cold_ATH1---
22.599.6GSM142781AM002_ATH1_A6-MCCOR-WDBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
21.799.6ArrayExpressE-MEXP-557-raw-cel-879731511---
21.799.6GSM142773AM002_ATH1_A8-MCCOR-GDBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
21.199.6GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
20.899.6ArrayExpressE-MEXP-557-raw-cel-879731574---
19.199.6ArrayExpressE-MEXP-550-raw-cel-871342445---
18.999.5GSM226275YHB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
18.699.5ArrayExpressE-MEXP-1299-raw-cel-1519902087---
18.199.5GSM133399Knight_2-1_wildtype-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
18.099.5ArrayExpressE-MEXP-550-raw-cel-871342382---
17.699.5ArrayExpressE-MEXP-1299-raw-cel-1519902558---
17.299.5GSM131387AtGen_6-7111_UV-Bstress-Shoots-0.5h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
16.999.5ArrayExpressE-MEXP-550-raw-cel-871342391---
16.599.5GSM297387At.StarchSD.WTSS3.SS3R2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
16.599.5GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
16.599.5ArrayExpressE-MEXP-185-raw-cel-358912110---
16.299.5GSM142777AM002_ATH1_A2-MCCOR-WDAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
16.199.5GSM131388AtGen_6-7112_UV-Bstress-Shoots-0.5h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
16.199.5ArrayExpressEvans_2-1_col-WT-ambient_ATH1---
16.099.5GSM142775AM002_ATH1_A10-MCCOR-ADAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
15.699.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.599.5ArrayExpressE-MEXP-550-raw-cel-871342436---
15.599.5ArrayExpressE-MEXP-557-raw-cel-879731583---
14.999.4ArrayExpressE-ATMX-19-raw-cel-1375547479---
14.899.4GSM142815SS002_ATH1_A7-smith-13hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
14.799.4ArrayExpressE-MEXP-285-raw-cel-440782938---
14.799.4GSM311270ged1 seedlings, biological rep2GSE12401Transcript abundance data from seedlings of wild-type Ws and ged1 (greening after extended darkness 1) mutantLink to GEO
14.599.4GSM142779AM002_ATH1_A4-MCCOR-GDAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
13.899.4GSM311269ged1 seedlings, biological rep1GSE12401Transcript abundance data from seedlings of wild-type Ws and ged1 (greening after extended darkness 1) mutantLink to GEO
13.799.4GSM142804SS001_ATH1_A7-Smith-10GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
13.599.4GSM197141wt_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
13.499.4GSM131217Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1GSE5618Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTALink to GEO
13.399.4GSM311271ged1 seedlings, biological rep3GSE12401Transcript abundance data from seedlings of wild-type Ws and ged1 (greening after extended darkness 1) mutantLink to GEO
13.399.4GSM131219Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1GSE5618Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTALink to GEO
13.299.4GSM183506WT_for_MYB29/76_rep3GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
13.299.4GSM226274YHB_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
13.299.4ArrayExpressCornah_1-15_msc_Rep3_ATH1---
13.299.4ArrayExpressE-MEXP-557-raw-cel-879731547---
13.199.4ArrayExpressEvans_2-6_fab2-mut-cold_ATH1---
13.099.4GSM133401Knight_2-2_wildtype-dk_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
12.699.3GSM226273YHB_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
12.699.3GSM125257Seedling_OETOP6B_rep2GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
12.599.3GSM244457Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp4GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
12.599.3ArrayExpressE-MEXP-443-raw-cel-669122963---
12.299.3ArrayExpressCornah_1-14_msc_Rep2_ATH1---
12.199.3GSM197146S82-2_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
12.099.3ArrayExpressE-MEXP-513-raw-cel-829814366---
11.999.3ArrayExpressE-MEXP-444-raw-cel-670291713---
11.999.3ArrayExpressE-MEXP-285-raw-cel-440782853---
11.899.3ArrayExpressE-MEXP-444-raw-cel-670291665---
11.899.3ArrayExpressE-MEXP-557-raw-cel-879731538---
11.699.3ArrayExpressE-MEXP-185-raw-cel-358912054---
11.699.3GSM2454749 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
11.599.3GSM197142aba3-1_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
11.299.2GSM2454849 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
11.199.2ArrayExpressE-MEXP-1299-raw-cel-1519902620---
11.199.2GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.999.2ArrayExpressE-ATMX-19-raw-cel-1375547496---
10.999.2ArrayExpressEvans_2-7_35s-FAD3-ambient_ATH1---
10.999.2GSM131259AtGen_6-1111_Cold(4°C)-Shoots-0.5h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
10.899.2ArrayExpressEvans_2-9_col-aeq-ambient_ATH1---
10.899.2ArrayExpressE-ATMX-19-raw-cel-1375547462---
10.699.2GSM253154end of the night AGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
10.599.2GSM244459Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
10.599.2ArrayExpressE-MEXP-285-raw-cel-440783091---
10.499.2GSM131260AtGen_6-1112_Cold(4°C)-Shoots-0.5h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
10.499.2ArrayExpressE-ATMX-19-raw-cel-1375547394---
10.399.2ArrayExpressE-MEXP-444-raw-cel-670291910---
10.399.2GSM237295Shoot Selenate rep2GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
10.299.2GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
10.199.2GSM142774AM002_ATH1_A9-MCCOR-AFAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
10.199.2ArrayExpressE-MEXP-1304-raw-cel-1530618308---
10.099.2GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.899.1ArrayExpressE-MEXP-285-raw-cel-440783035---
9.799.1ArrayExpressE-ATMX-19-raw-cel-1375547411---
9.799.1GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1ArrayExpressE-ATMX-33-raw-cel-1562596264---
9.599.1GSM244445Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
9.599.1ArrayExpressE-MEXP-185-raw-cel-358911662---
9.499.1ArrayExpressE-MEXP-185-raw-cel-358911718---
9.499.1ArrayExpressE-MEXP-475-raw-cel-680982332---
9.499.1ArrayExpressE-MEXP-550-raw-cel-871342409---
9.499.1GSM7705500h Col-0 replicate AGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
9.499.1ArrayExpressE-TABM-18-raw-cel-489543138---
9.499.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1GSM297896LWD1 and LWD2 in Arabidopsis photoperiod regulation (wt rep 2)GSE11762LWD1 and LWD2 in Arabidopsis photoperiod regulationLink to GEO
9.399.1GSM134774Col-0_5day_-lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
9.299.1GSM244456Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep1_exp3GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
9.299.1ArrayExpressE-MEXP-443-raw-cel-669122954---
9.299.1GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1ArrayExpressE-MEXP-185-raw-cel-358911774---
9.099.1ArrayExpressEvans_2-11_fab3-7-8-mut-aeq-ambient_ATH1---
8.999.0GSM142772AM002_ATH1_A7-MCCOR-GFBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
8.999.0GSM131468AtGen_6-9612_Heatstress(3h)+21hrecovery-Shoots-24.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
8.899.0ArrayExpressE-MEXP-444-raw-cel-670291526---
8.899.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.799.0GSM142691MH001_ATH1_A5-grevi-AC2GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
8.799.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.699.0GSM128718Pieterse_1-4_Control-72h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
8.699.0GSM125256Seedling_OETOP6B_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO



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