Specifically-expressed experiments

Gene ID	At4g25470
Gene name	CBF2 (C-REPEAT/DRE BINDING FACTOR 2)
Functional description	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
236.7	100.0	GSM131274	AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
233.2	100.0	GSM131270	AtGen_6-1322_Cold(4°C)-Roots-3.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
232.6	100.0	GSM131268	AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
225.3	100.0	GSM131273	AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
215.7	100.0	ArrayExpress	E-MEXP-67-raw-cel-323396457	-	-	-
199.7	100.0	ArrayExpress	E-MEXP-67-raw-cel-323396336	-	-	-
196.3	100.0	GSM131267	AtGen_6-1311_Cold(4°C)-Shoots-3.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
184.3	100.0	GSM74896	Wildtype_3H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
168.1	100.0	GSM131269	AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
166.2	100.0	GSM131272	AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
163.9	99.9	GSM74899	Wildtype_6H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
154.9	99.9	GSM74907	ice1_6H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
151.8	99.9	GSM131271	AtGen_6-1411_Cold(4°C)-Shoots-6.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
151.4	99.9	GSM74897	Wildtype_3H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
130.3	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
117.8	99.9	GSM128808	Zarka_3-4_MT-E2A_Rep1_ATH1	GSE5536	Response to CBF2 expression
110.1	99.9	GSM74898	Wildtype_6H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
98.2	99.9	GSM74905	ice1_3H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
93.8	99.9	GSM128807	Zarka_3-3_MT-E24B_Rep1_ATH1	GSE5536	Response to CBF2 expression
86.5	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
86.4	99.9	GSM74904	ice1_3H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
81.3	99.9	GSM74906	ice1_6H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
76.7	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
59.7	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
57.6	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
56.2	99.8	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
38.2	99.8	GSM131277	AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
36.9	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
36.2	99.7	GSM142767	MK001_ATH1_A1.4-Knigh-sco	GSE6167	The molecular basis of chilling and freezing stress
33.9	99.7	ArrayExpress	Evans_2-8_35s-FAD3-cold_ATH1	-	-	-
32.3	99.7	GSM131276	AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
30.8	99.7	GSM131275	AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
27.7	99.7	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
27.1	99.7	ArrayExpress	Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1	-	-	-
26.5	99.7	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
24.6	99.6	GSM74908	ice1_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
24.0	99.6	GSM74909	ice1_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
23.5	99.6	GSM173445	oxt6 mutant, biological rep1	GSE7211	A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
23.2	99.6	GSM47013	Col-0 3	GSE2473	Small RNA biogenesis mutants
22.4	99.6	ArrayExpress	Evans_2-4_fab1-mut-cold_ATH1	-	-	-
21.0	99.6	GSM128800	Zarka_2-4_MT-1HCB(SOIL)_Rep2_ATH1	GSE5535	Response to cold, soil grown plants
20.9	99.6	GSM142765	MK001_ATH1_A1.2-Knigh-wco	GSE6167	The molecular basis of chilling and freezing stress
19.5	99.6	GSM173447	oxt6 mutant, biological rep3	GSE7211	A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
19.4	99.6	GSM74900	Wildtype_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
18.9	99.5	GSM128799	Zarka_2-3_MT-1HCA(SOIL)_Rep1_ATH1	GSE5535	Response to cold, soil grown plants
18.4	99.5	ArrayExpress	Evans_2-2_col-WT-cold_ATH1	-	-	-
17.2	99.5	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
17.0	99.5	GSM173446	oxt6 mutant, biological rep2	GSE7211	A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
16.8	99.5	GSM74901	Wildtype_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
16.7	99.5	ArrayExpress	Evans_2-6_fab2-mut-cold_ATH1	-	-	-
14.6	99.4	GSM142769	MK001_ATH1_A-1.6-Knight-cco_repeat2	GSE6167	The molecular basis of chilling and freezing stress
14.6	99.4	ArrayExpress	E-TABM-126-raw-cel-1242543273	-	-	-
14.4	99.4	GSM47041	hyl1 31	GSE2473	Small RNA biogenesis mutants
14.1	99.4	GSM184530	Stele root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.9	99.3	ArrayExpress	Evans_2-10_col-aeq-cold_ATH1	-	-	-
12.2	99.3	GSM47040	hyl1 30	GSE2473	Small RNA biogenesis mutants
11.5	99.3	GSM218591	Whole roots 3.5hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.3	99.3	GSM128882	Mittler_1-6_MBF1c_Rep3_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
11.0	99.2	ArrayExpress	E-TABM-126-raw-cel-1242542617	-	-	-
10.8	99.2	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.1	99.2	GSM128881	Mittler_1-5_MBF1c_Rep2_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
9.7	99.1	GSM184528	Stele root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.5	99.1	GSM47012	Col-0 2	GSE2473	Small RNA biogenesis mutants
9.5	99.1	GSM184527	Stele root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.3	99.1	GSM128880	Mittler_1-4_MBF1c_Rep1_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
9.2	99.1	GSM218585	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM131281	AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)

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