CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At4g21070

Gene name ATBRCA1

Functional description Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
711.2 100.0 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
298.4 100.0 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
213.9 100.0 ArrayExpress E-ATMX-35-raw-cel-1574334832 - - -
213.6 100.0 GSM133949 Murray_2-5_T8-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
207.7 100.0 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
176.0 100.0 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
155.8 99.9 GSM245913 csn5 (csn5a-2 csn5b) mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
140.4 99.9 GSM245910 csn3-1 mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
135.6 99.9 GSM245915 csn5 (csn5a-2 csn5b) mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
132.3 99.9 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
126.8 99.9 GSM245914 csn5 (csn5a-2 csn5b) mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
118.5 99.9 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
104.2 99.9 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
102.3 99.9 ArrayExpress E-ATMX-35-raw-cel-1574334816 - - -
97.0 99.9 GSM88051 csn4-1_mutant replicate 3 GSE3865 CSN4-1 mutant analysis
89.5 99.9 GSM245912 csn3-1 mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
88.7 99.9 GSM245911 csn3-1 mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
84.1 99.9 GSM142885 CW001_ATH1_A1.4-WestC-kub GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
84.0 99.9 GSM131375 AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
67.6 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
66.5 99.8 GSM131369 AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
63.1 99.8 ArrayExpress E-ATMX-35-raw-cel-1574334800 - - -
51.8 99.8 GSM128753 De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1 GSE5529 Arabidopsis E2F target genes
50.4 99.8 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
49.0 99.8 GSM131372 AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
47.7 99.8 GSM131382 AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
47.5 99.8 GSM88049 csn4-1_mutant replicate 1 GSE3865 CSN4-1 mutant analysis
45.5 99.8 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
41.5 99.8 GSM128756 De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1 GSE5529 Arabidopsis E2F target genes
41.4 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.1 99.8 GSM131374 AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
38.8 99.8 GSM131370 AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
38.4 99.8 GSM131381 AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
35.9 99.7 GSM142883 CW001_ATH1_A1.2-WestC-wsb GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
35.6 99.7 GSM131376 AtGen_6-5512_Genotoxicstress-Shoots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
34.6 99.7 GSM131373 AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
34.6 99.7 GSM245925 csn5 (csn5a-2 csn5b) mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
32.5 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.1 99.7 GSM131371 AtGen_6-5411_Genotoxicstress-Shoots-6.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
27.6 99.7 GSM128755 De Veylder_1-7_E2Fa-Dpa_Rep3_ATH1 GSE5529 Arabidopsis E2F target genes
21.0 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.7 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.9 99.6 GSM245921 csn3-1_mutant_dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
18.9 99.5 GSM128754 De Veylder_1-6_E2Fa-Dpa_Rep2_ATH1 GSE5529 Arabidopsis E2F target genes
18.1 99.5 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.9 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.5 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.9 99.5 GSM245922 csn4-1_mutant_dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
15.7 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.4 99.5 GSM245920 csn3-1 mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
15.3 99.4 GSM245926 csn5 (csn5a-2 csn5b) mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
15.2 99.4 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.2 99.4 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.0 99.4 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.9 99.4 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.3 99.4 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.9 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.6 99.4 GSM88050 csn4-1_mutant replicate 2 GSE3865 CSN4-1 mutant analysis
13.5 99.4 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.0 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.5 99.3 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.0 99.3 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8 99.3 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.5 99.3 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.4 99.3 GSM245927 csn5 (csn5a-2 csn5b) mutant dark replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
11.4 99.3 GSM245924 csn4-1_mutant_dark replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
11.1 99.2 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7 99.2 GSM245923 csn4-1_mutant_dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
10.6 99.2 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.3 99.2 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.8 99.0 GSM131368 AtGen_6-5312_Genotoxicstress-Shoots-3.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
711.2	100.0	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
298.4	100.0	GSM133947	Murray_2-3_T4-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
213.9	100.0	ArrayExpress	E-ATMX-35-raw-cel-1574334832	-	-	-
213.6	100.0	GSM133949	Murray_2-5_T8-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
207.7	100.0	GSM133948	Murray_2-4_T6-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
176.0	100.0	GSM133950	Murray_2-6_T10-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
155.8	99.9	GSM245913	csn5 (csn5a-2 csn5b) mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
140.4	99.9	GSM245910	csn3-1 mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
135.6	99.9	GSM245915	csn5 (csn5a-2 csn5b) mutant light replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
132.3	99.9	GSM133952	Murray_2-8_T14-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
126.8	99.9	GSM245914	csn5 (csn5a-2 csn5b) mutant light replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
118.5	99.9	GSM245919	csn3-1 mutant dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
104.2	99.9	GSM133951	Murray_2-7_T12-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
102.3	99.9	ArrayExpress	E-ATMX-35-raw-cel-1574334816	-	-	-
97.0	99.9	GSM88051	csn4-1_mutant replicate 3	GSE3865	CSN4-1 mutant analysis
89.5	99.9	GSM245912	csn3-1 mutant light replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
88.7	99.9	GSM245911	csn3-1 mutant light replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
84.1	99.9	GSM142885	CW001_ATH1_A1.4-WestC-kub	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
84.0	99.9	GSM131375	AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
67.6	99.9	GSM133953	Murray_2-9_T16-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
66.5	99.8	GSM131369	AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
63.1	99.8	ArrayExpress	E-ATMX-35-raw-cel-1574334800	-	-	-
51.8	99.8	GSM128753	De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1	GSE5529	Arabidopsis E2F target genes
50.4	99.8	GSM131378	AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
49.0	99.8	GSM131372	AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
47.7	99.8	GSM131382	AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
47.5	99.8	GSM88049	csn4-1_mutant replicate 1	GSE3865	CSN4-1 mutant analysis
45.5	99.8	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
41.5	99.8	GSM128756	De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1	GSE5529	Arabidopsis E2F target genes
41.4	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.1	99.8	GSM131374	AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
38.8	99.8	GSM131370	AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
38.4	99.8	GSM131381	AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
35.9	99.7	GSM142883	CW001_ATH1_A1.2-WestC-wsb	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
35.6	99.7	GSM131376	AtGen_6-5512_Genotoxicstress-Shoots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
34.6	99.7	GSM131373	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
34.6	99.7	GSM245925	csn5 (csn5a-2 csn5b) mutant dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
32.5	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.1	99.7	GSM131371	AtGen_6-5411_Genotoxicstress-Shoots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
27.6	99.7	GSM128755	De Veylder_1-7_E2Fa-Dpa_Rep3_ATH1	GSE5529	Arabidopsis E2F target genes
21.0	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.7	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.9	99.6	GSM245921	csn3-1_mutant_dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
18.9	99.5	GSM128754	De Veylder_1-6_E2Fa-Dpa_Rep2_ATH1	GSE5529	Arabidopsis E2F target genes
18.1	99.5	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.9	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.5	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.9	99.5	GSM245922	csn4-1_mutant_dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
15.7	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.4	99.5	GSM245920	csn3-1 mutant dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
15.3	99.4	GSM245926	csn5 (csn5a-2 csn5b) mutant dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
15.2	99.4	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.2	99.4	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.0	99.4	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.9	99.4	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.3	99.4	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.9	99.4	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.6	99.4	GSM88050	csn4-1_mutant replicate 2	GSE3865	CSN4-1 mutant analysis
13.5	99.4	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.0	99.4	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.5	99.3	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.0	99.3	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8	99.3	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.5	99.3	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.4	99.3	GSM245927	csn5 (csn5a-2 csn5b) mutant dark replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
11.4	99.3	GSM245924	csn4-1_mutant_dark replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
11.1	99.2	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.7	99.2	GSM245923	csn4-1_mutant_dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
10.6	99.2	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.3	99.2	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.8	99.0	GSM131368	AtGen_6-5312_Genotoxicstress-Shoots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)

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Gene ID	At4g21070
Gene name	ATBRCA1
Functional description	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.