CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At4g02440

Gene name EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)

Functional description EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.3 99.4 GSM142779 AM002_ATH1_A4-MCCOR-GDA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
11.2 99.2 ArrayExpress E-MEXP-1094-raw-cel-1379507513 - - -
9.9 99.1 GSM67112 Arabidopsis_Seedling04 GSE3056 Arabidopsis Pollination Study
9.6 99.1 ArrayExpress E-MEXP-1299-raw-cel-1519902871 - - -
9.1 99.1 GSM40553 Total RNA - hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
8.7 99.0 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
8.4 99.0 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
8.3 99.0 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
8.2 99.0 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.9 98.9 ArrayExpress E-MEXP-1299-raw-cel-1519902780 - - -
7.8 98.9 ArrayExpress E-MEXP-1299-raw-cel-1519902420 - - -
7.8 98.9 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
7.7 98.9 GSM142773 AM002_ATH1_A8-MCCOR-GDB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.7 98.9 GSM131216 AtGen_D-26_1-FS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
7.6 98.9 GSM27364 lec1-1 Rosette Leaf GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
7.6 98.9 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
7.1 98.8 GSM142772 AM002_ATH1_A7-MCCOR-GFB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.1 98.8 GSM77188 20h pgm (Col-0) mutant replicate A GSE3424 Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
6.9 98.7 GSM131174 AtGen_D-6_1-AL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
6.8 98.7 GSM292079 pif1-2, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.4	GSM142779	AM002_ATH1_A4-MCCOR-GDA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
11.2	99.2	ArrayExpress	E-MEXP-1094-raw-cel-1379507513	-	-	-
9.9	99.1	GSM67112	Arabidopsis_Seedling04	GSE3056	Arabidopsis Pollination Study
9.6	99.1	ArrayExpress	E-MEXP-1299-raw-cel-1519902871	-	-	-
9.1	99.1	GSM40553	Total RNA - hypoxia stress	GSE2218	Changes in transcript abundance and association with large polysomes in response to hypoxia stress
8.7	99.0	GSM131207	AtGen_D-41_3-DS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
8.4	99.0	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
8.3	99.0	GSM253166	48h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
8.2	99.0	GSM142778	AM002_ATH1_A3-MCCOR-GFA	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.9	98.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902780	-	-	-
7.8	98.9	ArrayExpress	E-MEXP-1299-raw-cel-1519902420	-	-	-
7.8	98.9	GSM253164	24h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
7.7	98.9	GSM142773	AM002_ATH1_A8-MCCOR-GDB	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.7	98.9	GSM131216	AtGen_D-26_1-FS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
7.6	98.9	GSM27364	lec1-1 Rosette Leaf	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
7.6	98.9	GSM253163	24h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
7.1	98.8	GSM142772	AM002_ATH1_A7-MCCOR-GFB	GSE6169	Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.1	98.8	GSM77188	20h pgm (Col-0) mutant replicate A	GSE3424	Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
6.9	98.7	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
6.8	98.7	GSM292079	pif1-2, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings

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Gene ID	At4g02440
Gene name	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)
Functional description	EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.