CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g57390

Gene name AGL18

Functional description encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
427.9 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
348.8 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
183.3 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
146.8 99.9 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
140.8 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
127.6 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
127.5 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
127.5 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
124.9 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
108.4 99.9 ArrayExpress E-ATMX-35-raw-cel-1574334880 - - -
106.0 99.9 ArrayExpress E-ATMX-35-raw-cel-1574334864 - - -
100.5 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
91.6 99.9 ArrayExpress E-ATMX-35-raw-cel-1574334848 - - -
83.1 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
77.6 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
73.3 99.9 ArrayExpress E-MEXP-285-raw-cel-440782725 - - -
72.3 99.9 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
68.8 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
68.1 99.9 ArrayExpress E-MEXP-1138-raw-cel-1432772938 - - -
65.3 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772714 - - -
64.7 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773194 - - -
64.6 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773354 - - -
63.2 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773226 - - -
60.9 99.8 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
60.4 99.8 ArrayExpress E-MEXP-285-raw-cel-440782791 - - -
57.2 99.8 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
56.0 99.8 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
53.0 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772874 - - -
52.3 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773386 - - -
51.8 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772842 - - -
51.4 99.8 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
49.6 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772746 - - -
48.4 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773162 - - -
45.8 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432773002 - - -
44.8 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772970 - - -
42.4 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772778 - - -
41.9 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772650 - - -
41.6 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772810 - - -
41.3 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772682 - - -
39.4 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772522 - - -
39.1 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772586 - - -
38.9 99.8 ArrayExpress E-MEXP-1138-raw-cel-1432772906 - - -
34.7 99.7 ArrayExpress E-MEXP-1138-raw-cel-1432772554 - - -
34.2 99.7 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
32.5 99.7 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.8 99.7 ArrayExpress E-MEXP-1138-raw-cel-1432772618 - - -
29.6 99.7 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
26.3 99.7 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
23.8 99.6 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
22.1 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.4 99.6 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.4 99.6 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.7 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.6 99.6 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
18.9 99.5 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.9 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7 99.5 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
16.5 99.5 GSM131610 ATGE_43_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
16.3 99.5 GSM131611 ATGE_43_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.7 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.1 99.4 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.9 99.4 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.5 99.4 ArrayExpress E-ATMX-35-raw-cel-1574334832 - - -
14.0 99.4 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
13.0 99.4 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.5 99.3 ArrayExpress E-MEXP-509-raw-cel-829148703 - - -
11.7 99.3 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2 99.2 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.2 99.2 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.0 99.2 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
10.3 99.2 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.1 99.2 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.0 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.4 99.1 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3 99.1 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
8.9 99.0 ArrayExpress E-ATMX-35-raw-cel-1574334800 - - -
8.6 99.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
427.9	100.0	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
348.8	100.0	GSM311294	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
183.3	100.0	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
146.8	99.9	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
140.8	99.9	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
127.6	99.9	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
127.5	99.9	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
127.5	99.9	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
124.9	99.9	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
108.4	99.9	ArrayExpress	E-ATMX-35-raw-cel-1574334880	-	-	-
106.0	99.9	ArrayExpress	E-ATMX-35-raw-cel-1574334864	-	-	-
100.5	99.9	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
91.6	99.9	ArrayExpress	E-ATMX-35-raw-cel-1574334848	-	-	-
83.1	99.9	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
77.6	99.9	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
73.3	99.9	ArrayExpress	E-MEXP-285-raw-cel-440782725	-	-	-
72.3	99.9	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
68.8	99.9	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
68.1	99.9	ArrayExpress	E-MEXP-1138-raw-cel-1432772938	-	-	-
65.3	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772714	-	-	-
64.7	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773194	-	-	-
64.6	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773354	-	-	-
63.2	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773226	-	-	-
60.9	99.8	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
60.4	99.8	ArrayExpress	E-MEXP-285-raw-cel-440782791	-	-	-
57.2	99.8	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
56.0	99.8	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
53.0	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772874	-	-	-
52.3	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773386	-	-	-
51.8	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772842	-	-	-
51.4	99.8	GSM311295	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
49.6	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772746	-	-	-
48.4	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773162	-	-	-
45.8	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432773002	-	-	-
44.8	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772970	-	-	-
42.4	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772778	-	-	-
41.9	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772650	-	-	-
41.6	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772810	-	-	-
41.3	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772682	-	-	-
39.4	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772522	-	-	-
39.1	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772586	-	-	-
38.9	99.8	ArrayExpress	E-MEXP-1138-raw-cel-1432772906	-	-	-
34.7	99.7	ArrayExpress	E-MEXP-1138-raw-cel-1432772554	-	-	-
34.2	99.7	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
32.5	99.7	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.8	99.7	ArrayExpress	E-MEXP-1138-raw-cel-1432772618	-	-	-
29.6	99.7	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
26.3	99.7	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
23.8	99.6	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
22.1	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.4	99.6	GSM284388	Arabidopsis GMPE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.4	99.6	GSM311296	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.7	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.6	99.6	GSM311286	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
18.9	99.5	GSM311284	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
17.9	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7	99.5	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.5	99.5	GSM131610	ATGE_43_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
16.3	99.5	GSM131611	ATGE_43_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.7	99.5	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.1	99.4	GSM131592	ATGE_36_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.9	99.4	GSM131593	ATGE_36_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.5	99.4	ArrayExpress	E-ATMX-35-raw-cel-1574334832	-	-	-
14.0	99.4	GSM131609	ATGE_43_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
13.0	99.4	GSM131591	ATGE_36_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.5	99.3	ArrayExpress	E-MEXP-509-raw-cel-829148703	-	-	-
11.7	99.3	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2	99.2	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.2	99.2	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
11.0	99.2	GSM311285	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
10.3	99.2	GSM106909	opr3-JA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.1	99.2	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.0	99.2	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.4	99.1	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3	99.1	GSM10480	lec1-1 Cotyledon Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
8.9	99.0	ArrayExpress	E-ATMX-35-raw-cel-1574334800	-	-	-
8.6	99.0	GSM10479	lec1-1 Cotyledon Stage Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants

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Gene ID	At3g57390
Gene name	AGL18
Functional description	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.

Specifically-expressed experiments

Gene ID At3g57390 Gene name AGL18 Functional description encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.

Gene ID At3g57390

Gene name AGL18

Functional description encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.