Specifically-expressed experiments

Gene ID At3g56980
Gene name BHLH039
Functional description F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
342.6100.0GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
227.0100.0GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
223.8100.0GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
213.0100.0GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
179.2100.0GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
150.699.9GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
142.699.9GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
96.199.9GSM125256Seedling_OETOP6B_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
86.599.9GSM265470Arabidopsis, whole roots, -Fe, 24 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
85.899.9GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
82.299.9GSM265469Arabidopsis, whole roots, -Fe, 24 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
76.499.9GSM125257Seedling_OETOP6B_rep2GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
72.999.9GSM125254Seedling_OEA3L5_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
70.699.9GSM125255Seedling_OEA3L5_rep2GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
69.999.9GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
68.699.9GSM105206sta1_no treatement_Rep2GSE4662STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress toleranceLink to GEO
66.499.8GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
61.199.8GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
58.999.8GSM265426Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
55.899.8GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
53.399.8GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
47.199.8GSM125253Seedling_wild-type_rep2GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
46.799.8ArrayExpressE-ATMX-30-raw-cel-1513696731---
43.799.8GSM133293NO.30GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
42.099.8ArrayExpressE-MEXP-550-raw-cel-871342472---
42.099.8GSM125252Seedling_wild-type_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genesLink to GEO
40.699.8GSM297896LWD1 and LWD2 in Arabidopsis photoperiod regulation (wt rep 2)GSE11762LWD1 and LWD2 in Arabidopsis photoperiod regulationLink to GEO
37.299.7GSM207292Seedling_ConstantWhiteLight_48hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
35.699.7GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
34.799.7GSM105205sta1_no treatement_Rep1GSE4662STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress toleranceLink to GEO
34.599.7GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
33.299.7GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
32.999.7GSM265415Arabidopsis, root cells, -Fe, replicate 2GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
31.099.7GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
30.699.7GSM265416Arabidopsis, root cells, -Fe, replicate 3GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
27.399.7GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
26.699.7GSM179972Arabidopsis roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
25.299.6ArrayExpressE-MEXP-550-raw-cel-871342463---
24.899.6GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
24.699.6GSM179958Arabidopsis roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
24.099.6GSM134448St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
23.099.6GSM265467Arabidopsis, whole roots, -Fe, 12 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
22.499.6GSM179969Arabidopsis aux1 mutant roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
22.399.6GSM297894LWD1 and LWD2 in Arabidopsis photoperiod regulation (wt rep 1)GSE11762LWD1 and LWD2 in Arabidopsis photoperiod regulationLink to GEO
20.899.6ArrayExpressE-ATMX-30-raw-cel-1513696885---
20.399.6ArrayExpressE-ATMX-30-raw-cel-1513696930---
20.099.6GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
19.999.6GSM179970Arabidopsis aux1 mutant roots, ethylene treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
19.699.6GSM179971Arabidopsis roots, mock treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
19.599.6ArrayExpressE-ATMX-30-raw-cel-1513696675---
19.499.6GSM291119root - 21% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
19.399.6GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
19.299.6GSM128745Edwards_3-1_FRI-FLC-wt1_Rep1_ATH1GSE5528Identifying targets of FLC at 27oCLink to GEO
18.499.5GSM179973Arabidopsis roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
18.299.5GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
17.899.5GSM291024root - 08% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
17.799.5GSM142733CH001_ATH1_A012-Hampt-c1cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.Link to GEO
17.699.5GSM179960Arabidopsis roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
17.599.5GSM157327Hammond_3-11_Potassium-starved-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.599.5GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.299.5ArrayExpressE-MEXP-185-raw-cel-358912054---
16.299.5GSM179963Arabidopsis aux1 mutant roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
16.099.5GSM75512Col-0 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
15.999.5ArrayExpressE-MEXP-550-raw-cel-871342481---
15.799.5GSM207287Seedling_ConstantWhiteLight_28hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
15.599.5GSM128746Edwards_3-2_fri-flc1_Rep1_ATH1GSE5528Identifying targets of FLC at 27oCLink to GEO
15.099.4GSM157333Coates_1-5_Col-0_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
14.999.4GSM265468Arabidopsis, whole roots, -Fe, 12 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
14.799.4GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
14.599.4GSM297895LWD1 and LWD2 in Arabidopsis photoperiod regulation (lwd1lwd2 rep 1)GSE11762LWD1 and LWD2 in Arabidopsis photoperiod regulationLink to GEO
14.399.4GSM179974Arabidopsis roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
14.299.4GSM207291Seedling_ConstantWhiteLight_44hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
13.999.4GSM207290Seedling_ConstantWhiteLight_40hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
13.499.4GSM207286Seedling_ConstantWhiteLight_24hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
13.499.4GSM107670C24-LUC_WT_no treatment_Rep5GSE4662STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress toleranceLink to GEO
13.199.4GSM265464Arabidopsis, whole roots, -Fe, 3 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
13.099.4GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
12.899.3GSM207296Seedling_ConstantWhiteLight_64hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
12.799.3ArrayExpressE-ATMX-30-raw-cel-1513696778---
12.799.3GSM207289Seedling_ConstantWhiteLight_36hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
12.599.3GSM157339Coates_1-11_Col-3_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
12.099.3GSM265463Arabidopsis, whole roots, -Fe, 3 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
12.099.3GSM207297Seedling_ConstantWhiteLight_68hrGSE8365Identification of circadian-regulated genes of Arabidopsis thaliana.Link to GEO
12.099.3GSM133291NO.28GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
11.999.3GSM157331Coates_1-3_Col-3_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
11.799.3GSM266677Arabidopsis, root cells, stele, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
11.699.3GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
11.499.3ArrayExpressE-MEXP-550-raw-cel-871342454---
11.499.3GSM179967Arabidopsis aux1 mutant roots, air treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
11.199.2GSM157340Coates_1-12_ara1/2mut_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
11.099.2GSM265427Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
10.999.2GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
10.999.2GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
10.799.2GSM265466Arabidopsis, whole roots, -Fe, 6 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis rootsLink to GEO
10.699.2GSM133292NO.29GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
10.599.2GSM265414Arabidopsis, root cells, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
10.399.2GSM157335Coates_1-7_Col-3_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
9.899.1GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.799.1GSM157338Coates_1-10_ara1OX_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
9.799.1GSM266675Arabidopsis, root cells, stele, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.499.1GSM266673Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
9.499.1GSM157334Coates_1-6_ara1OX_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
9.399.1GSM25870B Treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
9.399.1ArrayExpressE-ATMX-5-raw-cel-1303134335---
8.999.0GSM179959Arabidopsis roots, air treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
8.899.0GSM157337Coates_1-9_Col-0_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
8.899.0GSM128748Edwards_3-4_fri-flc2_Rep2_ATH1GSE5528Identifying targets of FLC at 27oCLink to GEO
8.799.0ArrayExpressE-ATMX-5-raw-cel-1303134304---
8.799.0GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
8.699.0GSM291114root - 21% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO



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