Specifically-expressed experiments

Gene ID At3g55970
Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein
Functional description F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
192.8100.0GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
170.0100.0GSM128720Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
166.1100.0GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
154.699.9GSM151705gh3.5-1D 48 hpi, biological replicate 3GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
147.799.9GSM142845MG001_ATH1_A26-Torres-8N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
146.799.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
138.399.9GSM142848MG001_ATH1_A29-Torres-9N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
137.699.9GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
137.099.9GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
128.499.9GSM142831GM001_ATH1_A30-Torres-9N6_repeat1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
102.499.9GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
98.299.9GSM151703gh3.5-1D 48 hpi, biological replicate 1GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
92.399.9GSM151704gh3.5-1D 48 hpi, biological replicate 2GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
91.499.9GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
87.399.9GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
86.699.9GSM142836MG001_ATH1_A15-Torres-4N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
84.899.9GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
80.499.9GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
79.899.9GSM142832GM001_ATH1_A9-Torres-3N6_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
79.799.9GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
75.599.9GSM142842MG001_ATH1_A23-Torres-7N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
70.999.9GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
70.599.9GSM142834MG001_ATH1_A12-Torres-5N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
69.999.9ArrayExpressE-MEXP-807-raw-cel-1173273032---
67.699.9GSM142843MG001_ATH1_A24-Torres-7N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
56.399.8ArrayExpressE-MEXP-711-raw-cel-1563002902---
50.999.8GSM133025BC181-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
49.299.8GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
48.899.8GSM39192RRE1_C2GSE2169rre1 and rre2 mutantsLink to GEO
46.099.8GSM128655Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
44.499.8GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
44.399.8GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
41.899.8GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
41.799.8ArrayExpressE-MEXP-807-raw-cel-1173272948---
36.499.7GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
34.899.7GSM39208RRE2_C2GSE2169rre1 and rre2 mutantsLink to GEO
34.299.7GSM142855MG001_ATH1_A8-Torres-3N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
34.299.7GSM157362Ulker_2-5_WRKY-KO-40-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
33.099.7GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
31.199.7GSM157360Ulker_2-3_WRKY-KO-07-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
31.099.7ArrayExpressE-MEXP-711-raw-cel-1563002839---
30.899.7GSM39193RRE1_C3GSE2169rre1 and rre2 mutantsLink to GEO
30.799.7GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
29.999.7GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
29.699.7GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
29.499.7GSM157363Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
29.399.7GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
27.899.7ArrayExpressE-MEXP-807-raw-cel-1173272921---
27.099.7GSM39200Col_C2GSE2169rre1 and rre2 mutantsLink to GEO
26.699.7GSM39209RRE2_C3GSE2169rre1 and rre2 mutantsLink to GEO
26.499.7GSM157359Ulker_2-2_WRKY-KO-02-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
25.999.7GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
24.599.6GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
24.399.6ArrayExpressE-MEXP-807-raw-cel-1173273252---
23.999.6GSM142838MG001_ATH1_A17-Torres-6N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
23.399.6GSM157364Ulker_2-7_WT-Col-0-L-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
21.999.6GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
21.899.6GSM133733Buchanan-Wollaston_A-5-bwoll-NG1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
21.599.6ArrayExpressE-MEXP-807-raw-cel-1173273005---
20.599.6GSM39201Col_C3GSE2169rre1 and rre2 mutantsLink to GEO
20.199.6GSM142847MG001_ATH1_A28-Torres-9N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
19.799.6GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
19.499.6GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
19.099.5GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.299.5ArrayExpressE-MEXP-546-raw-cel-863289693---
18.199.5GSM184635Arabidopsis, root cells, 140 mM NaCl, replicate 2GSE7636Expression analysis of the effect of protoplasting and FACS sorting in rootsLink to GEO
17.099.5GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
16.199.5ArrayExpressE-MEXP-711-raw-cel-1563002803---
16.099.5GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
15.799.5GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
15.799.5GSM39207RRE2_C1GSE2169rre1 and rre2 mutantsLink to GEO
15.299.4GSM128671Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
14.999.4GSM128674Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
14.999.4GSM128670Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
14.599.4GSM157361Ulker_2-4_WRKY-KO-30-Pst-DC3000_Rep1_ATH1GSE6829Group II-A WRKY transcription factors and early leaf senescenceLink to GEO
14.299.4GSM271082Arabidopsis plant (tga2-5-6), 4h_response to OPDA_rep3GSE10732Identification of TGA-regulated genes in response to phytoprostane A1 and OPDALink to GEO
14.299.4ArrayExpressE-MEXP-711-raw-cel-1563002768---
14.199.4GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
14.199.4GSM271060Arabidopsis plant (Col-0), 4h_response to OPDA_rep3GSE10732Identification of TGA-regulated genes in response to phytoprostane A1 and OPDALink to GEO
13.799.4GSM133734Buchanan-Wollaston_A-6-bwoll-NG2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
13.599.4ArrayExpressE-MEXP-546-raw-cel-863289424---
13.499.4GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
13.099.4GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.599.3GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
12.499.3GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.099.3ArrayExpressE-MEXP-807-raw-cel-1173272832---
11.699.3GSM133294NO.31GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
11.599.3GSM128669Underwood_1-22_hrpAfliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
11.499.3ArrayExpressE-MEXP-546-raw-cel-863289532---
11.299.2GSM133295NO.32GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
11.199.2GSM271079Arabidopsis plant (tga2-5-6), 4h_response to OPDA_rep1GSE10732Identification of TGA-regulated genes in response to phytoprostane A1 and OPDALink to GEO
10.999.2GSM1330412525GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
10.699.2ArrayExpressE-TABM-62-raw-cel-720979469---
10.599.2GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
10.399.2GSM133296NO.33GSE5698AtGenExpress: Cytokinin treatment of seedlingsLink to GEO
10.199.2GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
9.999.1ArrayExpressE-MEXP-807-raw-cel-1173273144---
9.799.1ArrayExpressE-MEXP-1468-raw-cel-1591139018---
9.699.1ArrayExpressE-MEXP-546-raw-cel-863289476---
9.599.1GSM151701Col-0 48 hpi, biological replicate 2GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
9.499.1ArrayExpressE-ATMX-31-raw-cel-1516948001---
9.399.1GSM39210RRE2_C4GSE2169rre1 and rre2 mutantsLink to GEO
9.399.1GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.199.1GSM133028BC481-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infectionLink to GEO
8.899.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO



Back to the CoP portal site

Back to the KAGIANA project homepage