CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g55500

Gene name ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)

Functional description expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2018.4 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869573 - - -
905.4 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869803 - - -
670.0 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869515 - - -
105.9 99.9 ArrayExpress E-MEXP-1443-raw-cel-1581869745 - - -
59.9 99.8 GSM131296 AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
58.9 99.8 GSM131295 AtGen_6-2411_Osmoticstress-Shoots-6.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
44.6 99.8 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
34.3 99.7 ArrayExpress E-MEXP-475-raw-cel-680982521 - - -
32.7 99.7 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
25.2 99.6 GSM170911 abh1 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
24.6 99.6 ArrayExpress E-MEXP-475-raw-cel-680982485 - - -
22.7 99.6 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
21.8 99.6 GSM253162 8h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
20.0 99.6 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
19.9 99.6 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
19.1 99.6 GSM170897 Col-0 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
16.9 99.5 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
16.9 99.5 GSM131320 AtGen_6-3412_Saltstress-Shoots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
16.5 99.5 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.5 99.5 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
16.1 99.5 GSM133718 Urwin_A-2-Urwin-Inf_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
15.9 99.5 ArrayExpress E-MEXP-475-raw-cel-680982503 - - -
13.7 99.4 GSM170940 abh1 +ABA repl2 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
12.8 99.3 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.5 99.3 GSM131542 ATGE_26_C GSE5630 AtGenExpress: Developmental series (leaves)
11.4 99.3 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.2 99.2 ArrayExpress E-MEXP-475-raw-cel-680982449 - - -
10.9 99.2 GSM253161 8h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
10.9 99.2 GSM142786 HO001_ATH1_A3-Okamo-WS-ABA GSE6171 Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
10.4 99.2 ArrayExpress E-MEXP-1299-raw-cel-1519901137 - - -
10.1 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.8 99.1 GSM131540 ATGE_26_A GSE5630 AtGenExpress: Developmental series (leaves)
9.8 99.1 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.7 99.0 GSM131541 ATGE_26_B GSE5630 AtGenExpress: Developmental series (leaves)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2018.4	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
905.4	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869803	-	-	-
670.0	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
105.9	99.9	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
59.9	99.8	GSM131296	AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
58.9	99.8	GSM131295	AtGen_6-2411_Osmoticstress-Shoots-6.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
44.6	99.8	GSM131299	AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
34.3	99.7	ArrayExpress	E-MEXP-475-raw-cel-680982521	-	-	-
32.7	99.7	GSM131300	AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
25.2	99.6	GSM170911	abh1 +ABA repl1	GSE7112	Abscisic acid effect on wild type and the abh1 mutant
24.6	99.6	ArrayExpress	E-MEXP-475-raw-cel-680982485	-	-	-
22.7	99.6	GSM253163	24h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
21.8	99.6	GSM253162	8h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
20.0	99.6	GSM152139	Col-0 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
19.9	99.6	GSM253164	24h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
19.1	99.6	GSM170897	Col-0 +ABA repl1	GSE7112	Abscisic acid effect on wild type and the abh1 mutant
16.9	99.5	GSM152137	Col-0 drought 2	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
16.9	99.5	GSM131320	AtGen_6-3412_Saltstress-Shoots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
16.5	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.5	99.5	GSM152135	Col-0 drought 1	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
16.1	99.5	GSM133718	Urwin_A-2-Urwin-Inf_SLD	GSE5724	Plant gene expression associated with susceptibility to nematodes
15.9	99.5	ArrayExpress	E-MEXP-475-raw-cel-680982503	-	-	-
13.7	99.4	GSM170940	abh1 +ABA repl2	GSE7112	Abscisic acid effect on wild type and the abh1 mutant
12.8	99.3	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.5	99.3	GSM131542	ATGE_26_C	GSE5630	AtGenExpress: Developmental series (leaves)
11.4	99.3	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.2	99.2	ArrayExpress	E-MEXP-475-raw-cel-680982449	-	-	-
10.9	99.2	GSM253161	8h into an extended nightA	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
10.9	99.2	GSM142786	HO001_ATH1_A3-Okamo-WS-ABA	GSE6171	Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
10.4	99.2	ArrayExpress	E-MEXP-1299-raw-cel-1519901137	-	-	-
10.1	99.2	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.8	99.1	GSM131540	ATGE_26_A	GSE5630	AtGenExpress: Developmental series (leaves)
9.8	99.1	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.7	99.0	GSM131541	ATGE_26_B	GSE5630	AtGenExpress: Developmental series (leaves)

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At3g55500
Gene name	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)
Functional description	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.

Specifically-expressed experiments

Gene ID At3g55500 Gene name ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) Functional description expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.

Gene ID At3g55500

Gene name ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)

Functional description expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.