CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g51880

Gene name HMGB1 (HIGH MOBILITY GROUP B 1)

Functional description Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.4 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
44.3 99.8 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
42.9 99.8 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
39.7 99.8 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
27.4 99.7 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
23.6 99.6 ArrayExpress E-MEXP-1443-raw-cel-1581869515 - - -
21.5 99.6 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.6 99.6 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
17.3 99.5 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.0 99.5 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0 99.5 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
16.3 99.5 GSM282694 arf2_mock_rep1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
15.6 99.5 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
15.4 99.5 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.1 99.4 ArrayExpress E-MEXP-1443-raw-cel-1581869573 - - -
14.5 99.4 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.5 99.4 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
14.5 99.4 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.3 99.4 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
13.9 99.4 ArrayExpress E-MEXP-509-raw-cel-829148703 - - -
13.6 99.4 ArrayExpress E-MEXP-1299-raw-cel-1519903848 - - -
13.2 99.4 GSM282703 arf2_brz_2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
13.1 99.4 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.0 99.4 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.9 99.3 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.8 99.3 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.7 99.3 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
12.3 99.3 ArrayExpress E-MEXP-509-raw-cel-829148348 - - -
11.6 99.3 ArrayExpress E-MEXP-148-raw-cel-350529355 - - -
11.4 99.3 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.1 99.2 GSM282695 arf2_mock_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
10.7 99.2 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.5 99.2 GSM282696 arf2_mock_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.9 99.1 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.7 99.1 ArrayExpress E-MEXP-509-raw-cel-829148420 - - -
9.7 99.1 ArrayExpress E-NASC-78-raw-cel-1463195203 - - -
9.7 99.1 GSM282699 Col_BRZ_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.6 99.1 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.5 99.1 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.5 99.1 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
9.4 99.1 ArrayExpress E-MEXP-509-raw-cel-829148385 - - -
9.3 99.1 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
9.3 99.1 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2 99.1 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.1 99.1 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.9 99.0 GSM282702 Col_mock_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
8.8 99.0 ArrayExpress E-MEXP-509-raw-cel-829148129 - - -
8.6 99.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
50.4	99.8	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
44.3	99.8	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
42.9	99.8	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
39.7	99.8	GSM253166	48h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
27.4	99.7	GSM311294	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
23.6	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
21.5	99.6	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.6	99.6	GSM253165	48h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
17.3	99.5	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.0	99.5	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.0	99.5	GSM253164	24h into an extended nightC	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
16.3	99.5	GSM282694	arf2_mock_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
15.6	99.5	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
15.4	99.5	GSM284398	Arabidopsis GGSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.1	99.4	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
14.5	99.4	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.5	99.4	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
14.5	99.4	GSM142623	MC002_ATH1_A1.1-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.3	99.4	GSM253163	24h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
13.9	99.4	ArrayExpress	E-MEXP-509-raw-cel-829148703	-	-	-
13.6	99.4	ArrayExpress	E-MEXP-1299-raw-cel-1519903848	-	-	-
13.2	99.4	GSM282703	arf2_brz_2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
13.1	99.4	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.0	99.4	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.9	99.3	GSM284390	Arabidopsis GPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.8	99.3	GSM142629	MC002_ATH1_A3.1-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.7	99.3	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.3	99.3	ArrayExpress	E-MEXP-509-raw-cel-829148348	-	-	-
11.6	99.3	ArrayExpress	E-MEXP-148-raw-cel-350529355	-	-	-
11.4	99.3	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.1	99.2	GSM282695	arf2_mock_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
10.7	99.2	GSM142627	MC002_ATH1_A2.2-dubos-wtc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.5	99.2	GSM282696	arf2_mock_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.9	99.1	GSM142628	MC002_ATH1_A2.3-dubos-wtc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.7	99.1	ArrayExpress	E-MEXP-509-raw-cel-829148420	-	-	-
9.7	99.1	ArrayExpress	E-NASC-78-raw-cel-1463195203	-	-	-
9.7	99.1	GSM282699	Col_BRZ_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.6	99.1	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.5	99.1	GSM142630	MC002_ATH1_A3.2-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.5	99.1	GSM268247	WT-drought-1, biological rep 1	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
9.4	99.1	ArrayExpress	E-MEXP-509-raw-cel-829148385	-	-	-
9.3	99.1	GSM133119	RIKEN-YAMAUCHI2A	GSE5687	AtGenExpress: Different temperature treatment of seeds
9.3	99.1	GSM142634	MC002_ATH1_A4.3-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	GSM142633	MC002_ATH1_A4.2-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.1	99.1	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.9	99.0	GSM282702	Col_mock_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
8.8	99.0	ArrayExpress	E-MEXP-509-raw-cel-829148129	-	-	-
8.6	99.0	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)

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Gene ID	At3g51880
Gene name	HMGB1 (HIGH MOBILITY GROUP B 1)
Functional description	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.