Specifically-expressed experiments

Gene ID At3g49780
Gene name ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)
Functional description Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.099.8GSM133814Diamond_A-3-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
49.199.8GSM133815Diamond_A-4-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
49.099.8ArrayExpressE-MEXP-1443-raw-cel-1581869745---
46.299.8GSM133812Diamond_A-1-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
44.899.8GSM133808Diamond_A-1-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
44.499.8GSM133809Diamond_A-2-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
40.699.8GSM133810Diamond_A-3-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
39.599.8GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
35.599.7GSM133811Diamond_A-4-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
34.699.7GSM133813Diamond_A-2-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)Link to GEO
31.099.7ArrayExpressE-MEXP-1443-raw-cel-1581869803---
31.099.7ArrayExpressE-MEXP-1797-raw-cel-1669768084---
27.899.7ArrayExpressE-MEXP-1443-raw-cel-1581869688---
27.799.7ArrayExpressE-MEXP-807-raw-cel-1173273252---
25.899.7GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
25.799.7ArrayExpressE-MEXP-1443-raw-cel-1581869632---
24.799.6ArrayExpressE-MEXP-1797-raw-cel-1669767967---
24.499.6GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
22.599.6GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
22.499.6ArrayExpressE-MEXP-1797-raw-cel-1669768039---
21.099.6ArrayExpressE-TABM-63-raw-cel-681137195---
20.799.6ArrayExpressE-MEXP-807-raw-cel-1173273144---
20.599.6ArrayExpressE-MEXP-1797-raw-cel-1669767940---
20.199.6GSM245917wild type dark replicate 2GSE9728COP9 signalosome (csn) mutant analysisLink to GEO
19.799.6GSM142831GM001_ATH1_A30-Torres-9N6_repeat1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
19.699.6GSM133973Birnbaum_1-3_src5-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
19.199.6GSM142847MG001_ATH1_A28-Torres-9N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
18.499.5GSM131571ATGE_98_BGSE5631AtGenExpress: Developmental series (roots)Link to GEO
17.199.5GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
16.799.5GSM131570ATGE_98_AGSE5631AtGenExpress: Developmental series (roots)Link to GEO
16.399.5GSM131572ATGE_98_CGSE5631AtGenExpress: Developmental series (roots)Link to GEO
16.299.5GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
16.199.5GSM142848MG001_ATH1_A29-Torres-9N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
15.899.5GSM157330Coates_1-2_ara1OX_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
15.799.5ArrayExpressE-MEXP-1797-raw-cel-1669768030---
15.399.4GSM245918wild type dark replicate 3GSE9728COP9 signalosome (csn) mutant analysisLink to GEO
14.899.4GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
14.899.4GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.Link to GEO
14.799.4GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
14.699.4ArrayExpressE-TABM-126-raw-cel-1242543305---
14.599.4GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
14.399.4ArrayExpressE-TABM-126-raw-cel-1242543417---
14.299.4GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
14.199.4ArrayExpressE-MEXP-807-raw-cel-1173273060---
13.999.4ArrayExpressE-TABM-126-raw-cel-1242542569---
13.699.4ArrayExpressE-ATMX-31-raw-cel-1516947882---
13.599.4GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
13.499.4GSM75508Col-0 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
13.399.4GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.199.4GSM157332Coates_1-4_ara1/2mut_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
13.199.4ArrayExpressE-TABM-126-raw-cel-1242543369---
12.999.3GSM128673Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
12.799.3ArrayExpressE-TABM-63-raw-cel-681137124---
12.699.3GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.599.3ArrayExpressE-MEXP-807-raw-cel-1173273170---
12.499.3GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
12.399.3GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
12.399.3GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.299.3ArrayExpressE-ATMX-31-raw-cel-1516947899---
12.299.3ArrayExpressE-TABM-62-raw-cel-720975807---
12.199.3ArrayExpressE-TABM-62-raw-cel-720978228---
12.199.3ArrayExpressE-TABM-126-raw-cel-1242542121---
12.099.3GSM142905WW002_ATH1_A1-willa-CON-REP3GSE6181Assembly of the cell wall pectic matrix.Link to GEO
11.999.3GSM75511Col-0 6h MOCK replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.999.3GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.599.3GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.599.3GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
11.099.2ArrayExpressE-TABM-62-raw-cel-720980234---
11.099.2ArrayExpressE-ATMX-1-raw-cel-1112746154---
10.999.2GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.999.2GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.Link to GEO
10.999.2GSM231193wild-type at T0, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
10.899.2GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
10.799.2ArrayExpressE-TABM-62-raw-cel-720978074---
10.599.2GSM269494mkk1/mkk2, no-treatment, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutantLink to GEO
10.599.2GSM131140AtGen_B-26_2-5-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
10.499.2GSM131111AtGen_B-39_3-4-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
10.499.2GSM131574ATGE_99_BGSE5631AtGenExpress: Developmental series (roots)Link to GEO
10.499.2ArrayExpressE-TABM-126-raw-cel-1242542953---
10.299.2ArrayExpressE-TABM-62-raw-cel-720982524---
10.299.2ArrayExpressE-TABM-126-raw-cel-1242542489---
10.299.2GSM142833MG001_ATH1_A10-Torres-5N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.299.2GSM231199chl1 at T0, biological rep1GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
10.199.2GSM142780AM002_ATH1_A5-MCCOR-WFBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
10.099.2GSM142774AM002_ATH1_A9-MCCOR-AFAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
10.099.2GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thalianaLink to GEO
9.999.1ArrayExpressE-TABM-62-raw-cel-720976703---
9.999.1ArrayExpressE-MEXP-722-raw-cel-1062243108---
9.899.1ArrayExpressE-TABM-62-raw-cel-720974181---
9.899.1GSM131410AtGen_6-7622_UV-Bstress-Roots-24.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
9.899.1ArrayExpressE-MEXP-1112-raw-cel-1590665325---
9.799.1ArrayExpressE-MEXP-1112-raw-cel-1590665793---
9.799.1GSM131430AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
9.699.1GSM131566ATGE_94_CGSE5631AtGenExpress: Developmental series (roots)Link to GEO
9.699.1GSM131112AtGen_B-40_3-5-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
9.699.1GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
9.599.1ArrayExpressE-TABM-62-raw-cel-720982365---
9.599.1GSM131465AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
9.599.1ArrayExpressE-TABM-62-raw-cel-720973915---
9.499.1ArrayExpressE-MEXP-1112-raw-cel-1590665429---
9.499.1GSM75512Col-0 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.199.1GSM142776AM002_ATH1_A1-MCCOR-WFAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
9.199.1ArrayExpressE-MEXP-807-raw-cel-1173273223---
9.099.1GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.099.1ArrayExpressE-TABM-62-raw-cel-720977987---
9.099.1GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cellsLink to GEO
9.099.1ArrayExpressE-TABM-126-raw-cel-1242541945---
8.999.0ArrayExpressE-TABM-62-raw-cel-720983322---
8.999.0GSM173447oxt6 mutant, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thalianaLink to GEO
8.899.0ArrayExpressE-TABM-126-raw-cel-1242543273---
8.899.0GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0ArrayExpressE-TABM-126-raw-cel-1242542313---
8.799.0ArrayExpressE-TABM-126-raw-cel-1242543385---
8.799.0GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO



Back to the CoP portal site

Back to the KAGIANA project homepage