CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g49110

Gene name PRXCA (PEROXIDASE CA)

Functional description Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.3 99.7 GSM88049 csn4-1_mutant replicate 1 GSE3865 CSN4-1 mutant analysis
24.7 99.6 GSM88050 csn4-1_mutant replicate 2 GSE3865 CSN4-1 mutant analysis
21.0 99.6 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
20.1 99.6 GSM245912 csn3-1 mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
19.0 99.5 GSM245915 csn5 (csn5a-2 csn5b) mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
17.9 99.5 GSM245913 csn5 (csn5a-2 csn5b) mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
17.0 99.5 GSM245911 csn3-1 mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
16.1 99.5 GSM245920 csn3-1 mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
15.3 99.4 GSM88051 csn4-1_mutant replicate 3 GSE3865 CSN4-1 mutant analysis
15.2 99.4 GSM128720 Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
14.2 99.4 ArrayExpress E-MEXP-509-raw-cel-829148666 - - -
14.1 99.4 GSM257998 Phloem exudate_1 GSE10247 Transcriptome analysis of the Arabidopsis phloem
13.9 99.4 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.8 99.4 ArrayExpress E-ATMX-33-raw-cel-1562596241 - - -
13.2 99.4 GSM258001 Phloem exudate_3 GSE10247 Transcriptome analysis of the Arabidopsis phloem
13.1 99.4 GSM133733 Buchanan-Wollaston_A-5-bwoll-NG1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
12.0 99.3 GSM245914 csn5 (csn5a-2 csn5b) mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
12.0 99.3 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.6 99.3 GSM151703 gh3.5-1D 48 hpi, biological replicate 1 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.6 99.3 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.5 99.3 GSM151704 gh3.5-1D 48 hpi, biological replicate 2 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.5 99.3 ArrayExpress E-MEXP-807-raw-cel-1173273032 - - -
11.3 99.3 GSM151705 gh3.5-1D 48 hpi, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.2 99.2 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.1 99.2 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.1 99.2 ArrayExpress E-MEXP-509-raw-cel-829148090 - - -
10.7 99.2 GSM245910 csn3-1 mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
10.6 99.2 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
10.4 99.2 ArrayExpress E-MEXP-509-raw-cel-829148313 - - -
10.4 99.2 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.1 99.2 ArrayExpress E-MEXP-509-raw-cel-829148129 - - -
10.0 99.2 ArrayExpress E-MEXP-509-raw-cel-829148240 - - -
9.9 99.1 ArrayExpress E-ATMX-25-raw-cel-1441077482 - - -
9.7 99.1 ArrayExpress E-ATMX-33-raw-cel-1562596197 - - -
9.6 99.1 GSM133721 Deeken_A-1-Deeke-Tum_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
9.4 99.1 ArrayExpress E-MEXP-509-raw-cel-829148276 - - -
9.4 99.1 GSM245923 csn4-1_mutant_dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
9.3 99.1 ArrayExpress E-NASC-78-raw-cel-1463195283 - - -
9.1 99.1 ArrayExpress E-MEXP-509-raw-cel-829148385 - - -
9.1 99.1 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.0 99.1 GSM133735 Buchanan-Wollaston_A-7-bwoll-Ei1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
8.7 99.0 GSM184555 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.7 99.0 ArrayExpress E-MEXP-509-raw-cel-829148738 - - -
8.6 99.0 ArrayExpress E-MEXP-509-raw-cel-829148420 - - -

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.3	99.7	GSM88049	csn4-1_mutant replicate 1	GSE3865	CSN4-1 mutant analysis
24.7	99.6	GSM88050	csn4-1_mutant replicate 2	GSE3865	CSN4-1 mutant analysis
21.0	99.6	GSM245919	csn3-1 mutant dark replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
20.1	99.6	GSM245912	csn3-1 mutant light replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
19.0	99.5	GSM245915	csn5 (csn5a-2 csn5b) mutant light replicate 3	GSE9728	COP9 signalosome (csn) mutant analysis
17.9	99.5	GSM245913	csn5 (csn5a-2 csn5b) mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
17.0	99.5	GSM245911	csn3-1 mutant light replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
16.1	99.5	GSM245920	csn3-1 mutant dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
15.3	99.4	GSM88051	csn4-1_mutant replicate 3	GSE3865	CSN4-1 mutant analysis
15.2	99.4	GSM128720	Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
14.2	99.4	ArrayExpress	E-MEXP-509-raw-cel-829148666	-	-	-
14.1	99.4	GSM257998	Phloem exudate_1	GSE10247	Transcriptome analysis of the Arabidopsis phloem
13.9	99.4	GSM269823	T6 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.8	99.4	ArrayExpress	E-ATMX-33-raw-cel-1562596241	-	-	-
13.2	99.4	GSM258001	Phloem exudate_3	GSE10247	Transcriptome analysis of the Arabidopsis phloem
13.1	99.4	GSM133733	Buchanan-Wollaston_A-5-bwoll-NG1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
12.0	99.3	GSM245914	csn5 (csn5a-2 csn5b) mutant light replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
12.0	99.3	GSM269827	C2 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.6	99.3	GSM151703	gh3.5-1D 48 hpi, biological replicate 1	GSE6556	Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.6	99.3	GSM269829	WT leaf-drought-rep3	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.5	99.3	GSM151704	gh3.5-1D 48 hpi, biological replicate 2	GSE6556	Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.5	99.3	ArrayExpress	E-MEXP-807-raw-cel-1173273032	-	-	-
11.3	99.3	GSM151705	gh3.5-1D 48 hpi, biological replicate 3	GSE6556	Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
11.2	99.2	GSM269821	WT leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.1	99.2	GSM269813	WT leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.1	99.2	ArrayExpress	E-MEXP-509-raw-cel-829148090	-	-	-
10.7	99.2	GSM245910	csn3-1 mutant light replicate 1	GSE9728	COP9 signalosome (csn) mutant analysis
10.6	99.2	GSM133736	Buchanan-Wollaston_A-8-bwoll-Ei2_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
10.4	99.2	ArrayExpress	E-MEXP-509-raw-cel-829148313	-	-	-
10.4	99.2	GSM269825	T8 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.1	99.2	ArrayExpress	E-MEXP-509-raw-cel-829148129	-	-	-
10.0	99.2	ArrayExpress	E-MEXP-509-raw-cel-829148240	-	-	-
9.9	99.1	ArrayExpress	E-ATMX-25-raw-cel-1441077482	-	-	-
9.7	99.1	ArrayExpress	E-ATMX-33-raw-cel-1562596197	-	-	-
9.6	99.1	GSM133721	Deeken_A-1-Deeke-Tum_SLD_REP2	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
9.4	99.1	ArrayExpress	E-MEXP-509-raw-cel-829148276	-	-	-
9.4	99.1	GSM245923	csn4-1_mutant_dark replicate 2	GSE9728	COP9 signalosome (csn) mutant analysis
9.3	99.1	ArrayExpress	E-NASC-78-raw-cel-1463195283	-	-	-
9.1	99.1	ArrayExpress	E-MEXP-509-raw-cel-829148385	-	-	-
9.1	99.1	GSM269817	T8 leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.0	99.1	GSM133735	Buchanan-Wollaston_A-7-bwoll-Ei1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
8.7	99.0	GSM184555	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.7	99.0	ArrayExpress	E-MEXP-509-raw-cel-829148738	-	-	-
8.6	99.0	ArrayExpress	E-MEXP-509-raw-cel-829148420	-	-	-

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Gene ID	At3g49110
Gene name	PRXCA (PEROXIDASE CA)
Functional description	Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.

Specifically-expressed experiments

Gene ID At3g49110 Gene name PRXCA (PEROXIDASE CA) Functional description Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.

Gene ID At3g49110

Gene name PRXCA (PEROXIDASE CA)

Functional description Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.