CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g26790

Gene name FUS3 (FUSCA 3)

Functional description Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
471.7 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869573 - - -
451.8 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
287.9 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
278.4 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
228.0 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
194.5 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869515 - - -
184.8 100.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
169.0 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
160.7 99.9 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
157.6 99.9 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
134.8 99.9 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
131.2 99.9 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
106.2 99.9 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
83.6 99.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
75.1 99.9 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
69.0 99.9 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
52.7 99.8 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
50.7 99.8 GSM131692 ATGE_78_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
48.6 99.8 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
47.6 99.8 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.6 99.8 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
44.5 99.8 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
44.5 99.8 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
43.0 99.8 GSM131693 ATGE_78_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
42.2 99.8 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
41.3 99.8 GSM131691 ATGE_78_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
40.6 99.8 GSM311287 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
39.8 99.8 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.9 99.8 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
38.1 99.8 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
37.7 99.7 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
35.7 99.7 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
35.2 99.7 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
35.1 99.7 ArrayExpress E-ATMX-1-raw-cel-1112746267 - - -
32.1 99.7 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
32.0 99.7 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
30.7 99.7 ArrayExpress E-ATMX-1-raw-cel-1112746209 - - -
28.7 99.7 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
28.3 99.7 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
27.0 99.7 ArrayExpress E-ATMX-1-raw-cel-1112746154 - - -
26.9 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.9 99.7 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
24.6 99.6 ArrayExpress E-ATMX-1-raw-cel-1112746095 - - -
22.5 99.6 GSM305282 estradiol induced, biological replicate 1 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
16.0 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.6 99.5 GSM133817 Yang_1-2_old-pod_Rep1_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.1 99.4 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
15.1 99.4 GSM133816 Yang_1-1_young-pod_Rep1_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
14.0 99.4 GSM10484 lec1-1 Post-Mature Green Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
13.0 99.4 ArrayExpress E-MEXP-1451-raw-cel-1585200330 - - -
12.7 99.3 ArrayExpress E-MEXP-1451-raw-cel-1585200298 - - -
11.7 99.3 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.7 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3 99.3 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.2 99.2 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.0 99.2 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.6 99.2 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.6 99.2 ArrayExpress E-MEXP-1443-raw-cel-1581869745 - - -
9.4 99.1 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3 99.1 GSM10482 lec1-1 Mature Green Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
9.2 99.1 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.2 99.1 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0 99.1 ArrayExpress E-MEXP-1443-raw-cel-1581869803 - - -
8.9 99.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.8 99.0 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.7 99.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.7 99.0 ArrayExpress E-MEXP-285-raw-cel-440783213 - - -
8.6 99.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
471.7	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
451.8	100.0	GSM284386	Arabidopsis GSUS3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
287.9	100.0	GSM284387	Arabidopsis GSUS4b	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
278.4	100.0	GSM131699	ATGE_81_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
228.0	100.0	GSM131698	ATGE_81_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
194.5	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
184.8	100.0	GSM131695	ATGE_79_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
169.0	100.0	GSM131697	ATGE_81_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
160.7	99.9	GSM131694	ATGE_79_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
157.6	99.9	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
134.8	99.9	GSM10453	WT Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
131.2	99.9	GSM131696	ATGE_79_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
106.2	99.9	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
83.6	99.9	GSM133774	Lindsey_1-26_torpedo-meristem_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
75.1	99.9	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
69.0	99.9	GSM10451	WT Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
52.7	99.8	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
50.7	99.8	GSM131692	ATGE_78_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
48.6	99.8	GSM311288	Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
47.6	99.8	GSM133767	Lindsey_1-19_torpedo-basal_Rep4_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.6	99.8	GSM311290	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
44.5	99.8	GSM10448	WT Cotyledon Stage Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
44.5	99.8	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
43.0	99.8	GSM131693	ATGE_78_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
42.2	99.8	GSM10454	WT Post-Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
41.3	99.8	GSM131691	ATGE_78_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
40.6	99.8	GSM311287	Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
39.8	99.8	GSM133760	Lindsey_1-12_heart-stage-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.9	99.8	GSM131688	ATGE_77_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
38.1	99.8	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
37.7	99.7	GSM311289	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
35.7	99.7	GSM10456	WT Post-Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
35.2	99.7	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
35.1	99.7	ArrayExpress	E-ATMX-1-raw-cel-1112746267	-	-	-
32.1	99.7	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
32.0	99.7	GSM10449	WT Cotyledon Stage Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
30.7	99.7	ArrayExpress	E-ATMX-1-raw-cel-1112746209	-	-	-
28.7	99.7	GSM131689	ATGE_77_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
28.3	99.7	GSM131690	ATGE_77_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
27.0	99.7	ArrayExpress	E-ATMX-1-raw-cel-1112746154	-	-	-
26.9	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.9	99.7	GSM131704	ATGE_83_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
24.6	99.6	ArrayExpress	E-ATMX-1-raw-cel-1112746095	-	-	-
22.5	99.6	GSM305282	estradiol induced, biological replicate 1	GSE12137	LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
16.0	99.5	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.6	99.5	GSM133817	Yang_1-2_old-pod_Rep1_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.1	99.4	GSM10479	lec1-1 Cotyledon Stage Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
15.1	99.4	GSM133816	Yang_1-1_young-pod_Rep1_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
14.0	99.4	GSM10484	lec1-1 Post-Mature Green Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
13.0	99.4	ArrayExpress	E-MEXP-1451-raw-cel-1585200330	-	-	-
12.7	99.3	ArrayExpress	E-MEXP-1451-raw-cel-1585200298	-	-	-
11.7	99.3	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.7	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3	99.3	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
11.2	99.2	GSM133779	Lindsey_1-5_globular-basal_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.0	99.2	GSM133763	Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.6	99.2	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.6	99.2	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
9.4	99.1	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3	99.1	GSM10482	lec1-1 Mature Green Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
9.2	99.1	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.2	99.1	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0	99.1	ArrayExpress	E-MEXP-1443-raw-cel-1581869803	-	-	-
8.9	99.0	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9	99.0	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.8	99.0	GSM133755	Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.7	99.0	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.7	99.0	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
8.6	99.0	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1

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Gene ID	At3g26790
Gene name	FUS3 (FUSCA 3)
Functional description	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.