Specifically-expressed experiments

Gene ID At3g24650
Gene name ABI3 (ABA INSENSITIVE 3)
Functional description Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
455.4100.0GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
213.4100.0GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
201.0100.0GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
146.799.9GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
138.199.9GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
128.399.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
119.799.9GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
119.799.9GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
117.899.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
99.299.9GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
95.999.9GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
91.999.9GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
90.099.9GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
87.099.9GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
86.299.9GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
85.599.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
85.499.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
83.599.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
81.999.9GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
79.099.9GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
77.199.9GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
75.699.9GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
72.699.9GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
72.199.9GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
65.199.8GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
64.899.8GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
63.999.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
61.599.8GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
58.899.8GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
57.199.8GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
56.399.8GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
54.499.8GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
52.999.8GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
51.199.8GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
46.799.8GSM133320RIKEN-LI5BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
45.199.8GSM299341pkl Mutant Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
45.099.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
42.499.8GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
39.899.8GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
39.899.8GSM299337Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
38.099.8GSM133321RIKEN-LI6AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
34.999.7GSM299336Wild Type Germinating Seeds With Uniconazole Treatment Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
34.399.7ArrayExpressE-ATMX-1-raw-cel-1112746209---
30.199.7GSM299333Wild Type Germinating Seeds With Uniconazole Treatment Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.999.7GSM299410pkl Mutant Germinating Seeds With Uniconazole Treatment Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.899.7GSM299339pkl Mutant Germinating Seeds With Uniconazole Treatment Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.299.7GSM299408pkl Mutant Germinating Seeds With Uniconazole Treatment Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.999.7GSM299409pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.099.7GSM299334Wild Type Germinating Seeds With Uniconazole Treatment Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
26.599.7ArrayExpressE-MEXP-849-raw-cel-1181980990---
26.199.7ArrayExpressE-ATMX-1-raw-cel-1112746267---
26.099.7GSM133318RIKEN-LI4BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
25.899.7GSM153927ahg1-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
25.199.6GSM299340pkl Mutant Germinating Seeds With Uniconazole Treatment Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
24.299.6GSM299338Wild Type Germinating Seeds With Uniconazole Treatment Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
23.799.6GSM299335Wild Type Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
23.399.6GSM153929ahg3-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
21.799.6ArrayExpressE-MEXP-849-raw-cel-1181980998---
18.499.5GSM134305Penfield_1-7_endosperm-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
18.299.5GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
17.599.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.399.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
16.399.5ArrayExpressE-MEXP-849-raw-cel-1181980982---
16.199.5GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
15.599.5ArrayExpressE-ATMX-1-raw-cel-1112746154---
14.999.4ArrayExpressE-ATMX-1-raw-cel-1112746095---
14.799.4GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.699.4GSM305284estradiol induced, biological replicate 2GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
14.099.4GSM153925ABA control rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
14.099.4GSM299330pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
13.799.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.699.4GSM10484lec1-1 Post-Mature Green Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
13.199.4GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
12.999.3GSM305282estradiol induced, biological replicate 1GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
12.999.3GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.799.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.499.3GSM134306Penfield_1-8_endosperm-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
12.399.3GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.199.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.899.3ArrayExpressE-MEXP-1607-raw-cel-1620685778---
11.599.3GSM299321Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
11.499.3GSM131691ATGE_78_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.499.3GSM131693ATGE_78_FGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.099.2GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.899.2GSM299326Wild Type Germinating Seeds With Solvent Treatment Only Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
10.699.2GSM131692ATGE_78_EGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
10.699.2GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.199.2GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.099.2GSM299328pkl Mutant Germinating Seeds With Solvent Treatment Only Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.599.1GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.499.1GSM299327pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
9.399.1GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.999.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.799.0GSM299324Wild Type Germinating Seeds With Solvent Treatment Only Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO



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