Specifically-expressed experiments

Gene ID	At3g21500
Gene name	1-deoxy-D-xylulose-5-phosphate synthase
Functional description	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
871.8	100.0	GSM284398	Arabidopsis GGSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
695.9	100.0	GSM284397	Arabidopsis GGSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
208.4	100.0	ArrayExpress	E-MEXP-711-raw-cel-1563002902	-	-	-
200.3	100.0	GSM311283	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
167.9	100.0	GSM147964	WT Globular Stage Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
151.0	99.9	GSM311284	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
139.5	99.9	GSM311285	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
119.8	99.9	GSM147963	WT Globular Stage Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
97.4	99.9	GSM311286	Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
92.2	99.9	GSM133025	BC181-1	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
86.0	99.9	GSM74902	ice1_no treatment_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
75.7	99.9	GSM39200	Col_C2	GSE2169	rre1 and rre2 mutants
73.5	99.9	GSM133029	BC482-1	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
69.2	99.9	GSM74906	ice1_6H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
66.1	99.8	GSM39192	RRE1_C2	GSE2169	rre1 and rre2 mutants
65.9	99.8	GSM128720	Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
65.0	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
64.7	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.0	99.8	GSM39208	RRE2_C2	GSE2169	rre1 and rre2 mutants
51.3	99.8	GSM131603	ATGE_41_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
45.3	99.8	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
45.3	99.8	GSM131604	ATGE_41_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
42.9	99.8	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
41.5	99.8	GSM39193	RRE1_C3	GSE2169	rre1 and rre2 mutants
39.0	99.8	GSM131605	ATGE_41_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
39.0	99.8	GSM142846	MG001_ATH1_A27-Torres-9N1	GSE6176	Impact of Type III effectors on plant defense responses
38.7	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.5	99.8	GSM39212	RRE2_Chitin2	GSE2169	rre1 and rre2 mutants
35.0	99.7	GSM39209	RRE2_C3	GSE2169	rre1 and rre2 mutants
34.5	99.7	GSM147966	lec1-1 Globular Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
30.8	99.7	GSM147965	lec1-1 Globular Stage Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
30.3	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.0	99.7	GSM133733	Buchanan-Wollaston_A-5-bwoll-NG1_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
28.7	99.7	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
27.9	99.7	GSM39207	RRE2_C1	GSE2169	rre1 and rre2 mutants
27.3	99.7	GSM39201	Col_C3	GSE2169	rre1 and rre2 mutants
27.3	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.0	99.7	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
25.2	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.6	99.6	GSM131104	Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
24.5	99.6	GSM39191	RRE1_C1	GSE2169	rre1 and rre2 mutants
23.3	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.3	99.6	GSM39211	RRE2_Chitin1	GSE2169	rre1 and rre2 mutants
23.1	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.4	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.9	99.6	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
21.5	99.6	GSM39210	RRE2_C4	GSE2169	rre1 and rre2 mutants
21.4	99.6	GSM128731	Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
21.1	99.6	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.1	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.9	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.6	99.6	GSM131106	Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
20.6	99.6	ArrayExpress	E-MEXP-1451-raw-cel-1585200170	-	-	-
20.0	99.6	GSM39203	Col_Chitin1	GSE2169	rre1 and rre2 mutants
19.7	99.6	GSM131108	Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
18.6	99.5	GSM131105	Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
18.3	99.5	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
18.2	99.5	GSM39194	RRE1_C4	GSE2169	rre1 and rre2 mutants
18.2	99.5	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.7	99.5	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.7	99.5	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.5	99.5	GSM131107	Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
16.9	99.5	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.8	99.5	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.0	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.6	99.5	GSM142831	GM001_ATH1_A30-Torres-9N6_repeat1	GSE6176	Impact of Type III effectors on plant defense responses
15.5	99.5	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
15.5	99.5	ArrayExpress	E-MEXP-285-raw-cel-440783152	-	-	-
15.1	99.4	ArrayExpress	E-MEXP-711-raw-cel-1563002839	-	-	-
14.6	99.4	GSM74904	ice1_3H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
14.0	99.4	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.7	99.4	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.4	99.4	ArrayExpress	E-MEXP-1451-raw-cel-1585200202	-	-	-
12.9	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.8	99.3	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
12.8	99.3	GSM39199	Col_C1	GSE2169	rre1 and rre2 mutants
12.7	99.3	ArrayExpress	E-MEXP-1451-raw-cel-1585200234	-	-	-
12.5	99.3	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.3	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.9	99.3	GSM39202	Col_C4	GSE2169	rre1 and rre2 mutants
11.6	99.3	GSM205156	protoplast_controlDNA_rep1	GSE8257	Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.5	99.3	GSM133734	Buchanan-Wollaston_A-6-bwoll-NG2_SLD	GSE5727	The effects of mutants in stress response pathways on gene expression during senescence
10.8	99.2	GSM131103	Broadley_1-1_A1-Bo+P-nutrient-replete_Rep1_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
10.6	99.2	GSM131686	ATGE_76_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.2	99.2	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0	99.2	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.0	99.2	GSM131687	ATGE_76_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.5	99.1	GSM131685	ATGE_76_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.3	99.1	GSM142845	MG001_ATH1_A26-Torres-8N3	GSE6176	Impact of Type III effectors on plant defense responses
8.9	99.0	GSM128734	Hennig_1-6_siliques-CK_021114_3_B_Rep2_ATH1	GSE5526	Transcriptional Programs of Early Reproductive Stages in Arabidopsis
8.8	99.0	GSM74908	ice1_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
8.7	99.0	GSM205160	protoplast_controlDNA_rep2	GSE8257	Identification of KIN10-target genes in Arabidopsis mesophyll cells

Back to the CoP portal site

Back to the KAGIANA project homepage