Specifically-expressed experiments

Gene ID	At3g15950
Gene name	NAI2
Functional description	Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.8	99.7	GSM265468	Arabidopsis, whole roots, -Fe, 12 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
23.3	99.6	GSM265466	Arabidopsis, whole roots, -Fe, 6 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
21.7	99.6	ArrayExpress	E-MEXP-828-raw-cel-1156922572	-	-	-
20.6	99.6	GSM265461	Arabidopsis, whole roots, standard conditions, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
20.1	99.6	GSM265464	Arabidopsis, whole roots, -Fe, 3 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
19.9	99.6	GSM265462	Arabidopsis, whole roots, standard conditions, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
19.8	99.6	GSM265470	Arabidopsis, whole roots, -Fe, 24 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
19.5	99.6	GSM75515	Col-0 6h MOCK replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
19.4	99.6	GSM131575	ATGE_99_C	GSE5631	AtGenExpress: Developmental series (roots)
18.7	99.5	GSM131570	ATGE_98_A	GSE5631	AtGenExpress: Developmental series (roots)
18.4	99.5	GSM131571	ATGE_98_B	GSE5631	AtGenExpress: Developmental series (roots)
17.9	99.5	GSM131572	ATGE_98_C	GSE5631	AtGenExpress: Developmental series (roots)
17.5	99.5	GSM265465	Arabidopsis, whole roots, -Fe, 6 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.8	99.5	GSM265463	Arabidopsis, whole roots, -Fe, 3 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.5	99.5	GSM265469	Arabidopsis, whole roots, -Fe, 24 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.5	99.5	GSM231201	chl1 at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
16.3	99.5	GSM291114	root - 21% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
16.1	99.5	GSM184891	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.7	99.5	GSM231198	wild-type at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
15.5	99.5	GSM131573	ATGE_99_A	GSE5631	AtGenExpress: Developmental series (roots)
15.4	99.5	GSM133141	S1500_8H_A	GSE5688	AtGenExpress: Response to sulfate limitation
15.4	99.5	GSM266662	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
15.2	99.4	GSM131574	ATGE_99_B	GSE5631	AtGenExpress: Developmental series (roots)
15.2	99.4	GSM231204	chl1 at T0.5, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
14.7	99.4	GSM265467	Arabidopsis, whole roots, -Fe, 12 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
14.7	99.4	GSM131187	AtGen_D-20_2-RL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
14.7	99.4	GSM131569	ATGE_95_C	GSE5631	AtGenExpress: Developmental series (roots)
14.5	99.4	GSM131568	ATGE_95_B	GSE5631	AtGenExpress: Developmental series (roots)
14.3	99.4	GSM131567	ATGE_95_A	GSE5631	AtGenExpress: Developmental series (roots)
14.1	99.4	GSM231195	wild-type at T0, biological rep3	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
13.5	99.4	GSM291023	root - 08% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
13.5	99.4	GSM75518	slr-1 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
13.5	99.4	GSM290825	root - 04% oxygen - 30min - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
13.5	99.4	GSM157335	Coates_1-7_Col-3_Rep2_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
13.4	99.4	GSM231203	chl1 at T0.5, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
13.3	99.4	GSM184889	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
13.2	99.4	GSM157340	Coates_1-12_ara1/2mut_Rep3_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
13.2	99.4	GSM133142	S1500_8H_B	GSE5688	AtGenExpress: Response to sulfate limitation
13.1	99.4	GSM131204	AtGen_D-38_3-AL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
13.0	99.4	GSM184890	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
12.8	99.3	GSM131191	AtGen_D-24_2-WL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
12.6	99.3	GSM133127	S0_4H_A	GSE5688	AtGenExpress: Response to sulfate limitation
12.6	99.3	GSM131566	ATGE_94_C	GSE5631	AtGenExpress: Developmental series (roots)
12.5	99.3	GSM131202	AtGen_D-36_3-RL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
12.5	99.3	GSM133139	S1500_4H_A	GSE5688	AtGenExpress: Response to sulfate limitation
12.3	99.3	GSM131564	ATGE_94_A	GSE5631	AtGenExpress: Developmental series (roots)
12.3	99.3	GSM131203	AtGen_D-37_3-BL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
12.1	99.3	GSM157329	Coates_1-1_Col-0_Rep1_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
11.9	99.3	GSM157336	Coates_1-8_ara1/2mut_Rep2_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
11.9	99.3	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
11.8	99.3	GSM231197	wild-type at T0.5, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.7	99.3	GSM133133	S1500_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
11.6	99.3	GSM231196	wild-type at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.6	99.3	GSM131565	ATGE_94_B	GSE5631	AtGenExpress: Developmental series (roots)
11.5	99.3	GSM231202	chl1 at T0.5, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
11.4	99.3	GSM133140	S1500_4H_B	GSE5688	AtGenExpress: Response to sulfate limitation
11.4	99.3	GSM133129	S0_8H_A	GSE5688	AtGenExpress: Response to sulfate limitation
11.3	99.3	GSM75511	Col-0 6h MOCK replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
11.3	99.3	GSM133137	S1500_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
11.0	99.2	GSM133130	S0_8H_B	GSE5688	AtGenExpress: Response to sulfate limitation
11.0	99.2	GSM131188	AtGen_D-21_2-BL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
11.0	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243239	-	-	-
11.0	99.2	GSM179976	Arabidopsis ein2 mutant roots, mock treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.8	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243559	-	-	-
10.8	99.2	GSM131200	AtGen_D-34_3-FL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.8	99.2	GSM133128	S0_4H_B	GSE5688	AtGenExpress: Response to sulfate limitation
10.7	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243108	-	-	-
10.7	99.2	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.6	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243048	-	-	-
10.6	99.2	GSM231194	wild-type at T0, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
10.6	99.2	GSM153929	ahg3-1 rep2	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
10.5	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243429	-	-	-
10.5	99.2	GSM131433	AtGen_6-8524_Woundingstress-Roots-12.0h_Rep1	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
10.4	99.2	GSM133125	S0_2H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.4	99.2	GSM266664	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.3	99.2	GSM133134	S1500_12H_B	GSE5688	AtGenExpress: Response to sulfate limitation
10.3	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062242857	-	-	-
10.2	99.2	GSM231200	chl1 at T0, biological rep2	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
10.2	99.2	GSM131206	AtGen_D-40_3-WL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.1	99.2	GSM207297	Seedling_ConstantWhiteLight_68hr	GSE8365	Identification of circadian-regulated genes of Arabidopsis thaliana.
10.1	99.2	GSM133989	Birnbaum_1-22_gl2-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
10.0	99.2	ArrayExpress	E-MEXP-722-raw-cel-1062243314	-	-	-
10.0	99.2	GSM231193	wild-type at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
9.9	99.1	GSM131185	AtGen_D-18_2-FL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.9	99.1	GSM133138	S1500_2H_B	GSE5688	AtGenExpress: Response to sulfate limitation
9.8	99.1	GSM157337	Coates_1-9_Col-0_Rep3_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
9.7	99.1	GSM9585	arf19-1_control_3	GSE627	Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
9.7	99.1	ArrayExpress	E-MEXP-722-raw-cel-1062243390	-	-	-
9.6	99.1	GSM131173	AtGen_D-5_1-BL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM266663	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.6	99.1	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	ArrayExpress	E-MEXP-722-raw-cel-1062243183	-	-	-
9.5	99.1	GSM142753	MJ001_ATH1_A4-jones-rh2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.5	99.1	GSM231199	chl1 at T0, biological rep1	GSE9148	Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
9.5	99.1	GSM133121	S0_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
9.4	99.1	GSM153923	No ABA control rep2	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
9.4	99.1	ArrayExpress	E-MEXP-722-raw-cel-1062242948	-	-	-
9.4	99.1	GSM207292	Seedling_ConstantWhiteLight_48hr	GSE8365	Identification of circadian-regulated genes of Arabidopsis thaliana.
9.4	99.1	GSM131176	AtGen_D-8_1-WL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.3	99.1	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.3	99.1	GSM207293	Seedling_ConstantWhiteLight_52hr	GSE8365	Identification of circadian-regulated genes of Arabidopsis thaliana.
9.3	99.1	GSM179977	Arabidopsis ein2 mutant roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
9.2	99.1	GSM207295	Seedling_ConstantWhiteLight_60hr	GSE8365	Identification of circadian-regulated genes of Arabidopsis thaliana.
9.2	99.1	GSM179975	Arabidopsis ein2 mutant roots, mock treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
9.2	99.1	GSM290755	root - 01% oxygen - 2h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.1	99.1	GSM290757	root - 01% oxygen - 30min - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.1	99.1	GSM142752	MJ001_ATH1_A3-jones-rh1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
9.1	99.1	ArrayExpress	E-MEXP-722-raw-cel-1062243516	-	-	-
9.1	99.1	GSM153925	ABA control rep2	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
9.0	99.1	GSM131434	AtGen_6-8525_Woundingstress-Roots-12.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
9.0	99.1	GSM291113	root - 21% oxygen - 30min - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.0	99.1	GSM157339	Coates_1-11_Col-3_Rep3_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
8.9	99.0	GSM290828	root - 04% oxygen - 48h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.9	99.0	GSM290761	root - 04% oxygen - 2h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.9	99.0	GSM291119	root - 21% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.8	99.0	ArrayExpress	E-MEXP-828-raw-cel-1156922613	-	-	-
8.8	99.0	GSM157332	Coates_1-4_ara1/2mut_Rep1_ATH1	GSE6826	Identification of candidate Arabidillo target genes in Arabidopsis
8.7	99.0	GSM319205	35S-MIF1 line #124, dark grown, replicate1	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
8.7	99.0	GSM299409	pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
8.7	99.0	ArrayExpress	E-MEXP-828-raw-cel-1156922553	-	-	-
8.6	99.0	GSM131170	AtGen_D-2_1-FL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
8.6	99.0	GSM109115	vte2-1(Col-0) 1 day, biological rep3	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis

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