| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 28.2 | 99.7 | GSM290758 | root - 01% oxygen - 48h - A | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants |  |
| 26.2 | 99.7 | GSM77175 | 04h low CO2 + light replicate A | GSE3423 | Carbon fixation (endogenous sugar) and light-dependent gene expression | |
| 20.4 | 99.6 | GSM128662 | Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 | GSE5520 | Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction | |
| 20.2 | 99.6 | GSM291024 | root - 08% oxygen - 48h - A | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 19.9 | 99.6 | GSM291119 | root - 21% oxygen - 48h - A | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 18.4 | 99.5 | GSM133117 | RIKEN-YAMAUCHI1A | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 17.2 | 99.5 | GSM204069 | protoplast_hypoxia_rep1 | GSE8248 | Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells | |
| 17.1 | 99.5 | GSM270866 | Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 | GSE10719 | Response of Arabidopsis cell culture to phytoprostane A1 | |
| 16.8 | 99.5 | GSM265424 | Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1 | GSE10497 | Expression analysis of root developmental zones after iron deficiency (-Fe) treatment | |
| 15.3 | 99.4 | ArrayExpress | E-TABM-63-raw-cel-681137195 | - | - | - |
| 14.2 | 99.4 | GSM133786 | Brueggemann_A-4-Brueg-PpH_SLD | GSE5731 | UV-B Responses in Light Grown Plants: Similarities to Biotic Stress | |
| 13.9 | 99.4 | GSM205160 | protoplast_controlDNA_rep2 | GSE8257 | Identification of KIN10-target genes in Arabidopsis mesophyll cells | |
| 13.5 | 99.4 | GSM75509 | Col-0 2h NAA replicate 1 | GSE3350 | SLR/IAA14-dependent auxin induced lateral root initiation | |
| 13.4 | 99.4 | GSM133787 | Brueggemann_A-5-Brueg-Mck_SLD | GSE5731 | UV-B Responses in Light Grown Plants: Similarities to Biotic Stress | |
| 13.2 | 99.4 | GSM282694 | arf2_mock_rep1 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 12.7 | 99.3 | ArrayExpress | Evans_2-11_fab3-7-8-mut-aeq-ambient_ATH1 | - | - | - |
| 12.5 | 99.3 | ArrayExpress | E-TABM-63-raw-cel-681137124 | - | - | - |
| 12.3 | 99.3 | GSM157363 | Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1 | GSE6829 | Group II-A WRKY transcription factors and early leaf senescence | |
| 12.1 | 99.3 | GSM128660 | Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 | GSE5520 | Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction | |
| 11.5 | 99.3 | GSM282696 | arf2_mock_rep3 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 11.2 | 99.2 | ArrayExpress | Capper_1-6_C3_water | - | - | - |
| 11.0 | 99.2 | GSM157364 | Ulker_2-7_WT-Col-0-L-Pst-DC3000_Rep1_ATH1 | GSE6829 | Group II-A WRKY transcription factors and early leaf senescence | |
| 10.8 | 99.2 | GSM272992 | flu over-tAPX 14-2, biological rep2 | GSE10812 | Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves | |
| 10.7 | 99.2 | GSM282695 | arf2_mock_rep2 | GSE11216 | Brassinazole treatment of arf2 and wild-type dark-grown seedlings | |
| 10.7 | 99.2 | GSM134304 | Penfield_1-6_endosperm-ABA_Rep3_ATH1 | GSE5751 | The early post-germinative embryo and endosperm transcriptomes in Arabidopsis | |
| 10.6 | 99.2 | GSM25870 | B Treated - 1 | GSE1491 | Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis | |
| 10.5 | 99.2 | ArrayExpress | E-TABM-63-raw-cel-681137052 | - | - | - |
| 10.5 | 99.2 | GSM128676 | Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 | GSE5520 | Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction | |
| 10.4 | 99.2 | ArrayExpress | E-MEXP-1094-raw-cel-1379507513 | - | - | - |
| 10.4 | 99.2 | ArrayExpress | Capper_1-1_A3_estradiol | - | - | - |
| 10.4 | 99.2 | ArrayExpress | E-MEXP-1094-raw-cel-1379507273 | - | - | - |
| 10.2 | 99.2 | GSM290828 | root - 04% oxygen - 48h - F | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 9.8 | 99.1 | ArrayExpress | Evans_2-1_col-WT-ambient_ATH1 | - | - | - |
| 9.8 | 99.1 | GSM272991 | flu over-tAPX 14-2, biological rep1 | GSE10812 | Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves | |
| 9.6 | 99.1 | GSM134307 | Penfield_1-9_endosperm-PAC_Rep3_ATH1 | GSE5751 | The early post-germinative embryo and endosperm transcriptomes in Arabidopsis | |
| 9.4 | 99.1 | GSM157358 | Ulker_2-1_WT-Col-0-L-MgCl2_Rep1_ATH1 | GSE6829 | Group II-A WRKY transcription factors and early leaf senescence | |
| 9.3 | 99.1 | ArrayExpress | Evans_2-9_col-aeq-ambient_ATH1 | - | - | - |
| 9.2 | 99.1 | GSM291118 | root - 21% oxygen - 48h - B | GSE11558 | transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants | |
| 9.2 | 99.1 | GSM133309 | RIKEN-NAKABAYASHI4B | GSE5700 | AtGenExpress: Effect of ABA during seed imbibition | |
| 9.2 | 99.1 | GSM157359 | Ulker_2-2_WRKY-KO-02-Pst-DC3000_Rep1_ATH1 | GSE6829 | Group II-A WRKY transcription factors and early leaf senescence | |
| 9.1 | 99.1 | GSM253165 | 48h into an extended nightB | GSE10016 | Expression data of Arabidopsis thaliana rosettes in an extended night | |
| 9.0 | 99.1 | GSM75513 | Col-0 2h NAA replicate 2 | GSE3350 | SLR/IAA14-dependent auxin induced lateral root initiation | |
| 9.0 | 99.1 | ArrayExpress | E-TABM-63-raw-cel-681137015 | - | - | - |
| 8.9 | 99.0 | GSM133304 | RIKEN-NAKABAYASHI1B | GSE5700 | AtGenExpress: Effect of ABA during seed imbibition | |
| 8.8 | 99.0 | GSM128706 | Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1 | GSE5523 | Environmental Genomics of Calcicole-calcifuge physiology | |
| 8.8 | 99.0 | GSM134303 | Penfield_1-5_endosperm-ABA_Rep2_ATH1 | GSE5751 | The early post-germinative embryo and endosperm transcriptomes in Arabidopsis | |
| 8.7 | 99.0 | ArrayExpress | E-MEXP-509-raw-cel-829148090 | - | - | - |
| 8.7 | 99.0 | GSM133118 | RIKEN-YAMAUCHI1B | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 8.7 | 99.0 | GSM158702 | HY213-ESTRADIOL-REP1 | GSE6954 | Identification of AGL24 downstream genes by using XVE inducible system | |
| 8.6 | 99.0 | GSM25874 | IAA/A Treated - 2 | GSE1491 | Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis | |
