| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 28.0 | 99.7 | GSM226267 | WT(Ler)_Dark_replicate1 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks |  |
| 26.2 | 99.7 | ArrayExpress | E-MEXP-715-raw-cel-1121836005 | - | - | - |
| 26.1 | 99.7 | ArrayExpress | E-MEXP-715-raw-cel-1121835979 | - | - | - |
| 23.9 | 99.6 | GSM226269 | WT(Ler)_Dark_replicate3 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 22.3 | 99.6 | GSM226271 | phyAphyB_Dark_replicate2 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 21.9 | 99.6 | GSM226272 | phyAphyB_Dark_replicate3 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 21.1 | 99.6 | ArrayExpress | E-MEXP-1784-raw-cel-1661573053 | - | - | - |
| 20.3 | 99.6 | GSM131174 | AtGen_D-6_1-AL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 19.6 | 99.6 | GSM131177 | AtGen_D-9_1-DS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 19.6 | 99.6 | ArrayExpress | E-MEXP-1304-raw-cel-1530618235 | - | - | - |
| 19.3 | 99.6 | GSM131189 | AtGen_D-22_2-AL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 19.2 | 99.6 | GSM131207 | AtGen_D-41_3-DS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 19.1 | 99.6 | GSM131192 | AtGen_D-25_2-DS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 18.9 | 99.5 | ArrayExpress | E-MEXP-1304-raw-cel-1530618203 | - | - | - |
| 18.5 | 99.5 | ArrayExpress | E-MEXP-715-raw-cel-1121836087 | - | - | - |
| 18.5 | 99.5 | GSM131171 | AtGen_D-3_1-PL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 18.3 | 99.5 | ArrayExpress | E-MEXP-1304-raw-cel-1530617900 | - | - | - |
| 18.3 | 99.5 | GSM131169 | AtGen_D-1_1-DL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 18.1 | 99.5 | GSM131214 | AtGen_D-48_3-WS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.9 | 99.5 | ArrayExpress | E-MEXP-1304-raw-cel-1530618068 | - | - | - |
| 17.9 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661573074 | - | - | - |
| 17.6 | 99.5 | GSM131205 | AtGen_D-39_3-UL_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.6 | 99.5 | GSM134516 | Col-0_4day_dark_+lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 17.5 | 99.5 | ArrayExpress | E-MEXP-1784-raw-cel-1661573032 | - | - | - |
| 17.5 | 99.5 | GSM131186 | AtGen_D-19_2-PL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.3 | 99.5 | ArrayExpress | E-MEXP-715-raw-cel-1121835949 | - | - | - |
| 17.3 | 99.5 | ArrayExpress | E-MEXP-715-raw-cel-1121836113 | - | - | - |
| 17.2 | 99.5 | GSM131216 | AtGen_D-26_1-FS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.2 | 99.5 | GSM131180 | AtGen_D-12_1-RS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 17.0 | 99.5 | GSM131199 | AtGen_D-33_3-DL_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.9 | 99.5 | ArrayExpress | E-MEXP-1304-raw-cel-1530617971 | - | - | - |
| 16.9 | 99.5 | GSM131209 | AtGen_D-43_3-PS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.9 | 99.5 | GSM134518 | Col-0_4day_red illumination_-lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 16.7 | 99.5 | GSM131175 | AtGen_D-7_1-UL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.6 | 99.5 | ArrayExpress | E-MEXP-1304-raw-cel-1530618033 | - | - | - |
| 16.6 | 99.5 | GSM131215 | AtGen_D-17_2-DL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.5 | 99.5 | GSM131204 | AtGen_D-38_3-AL_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.1 | 99.5 | GSM131208 | AtGen_D-42_3-FS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 16.0 | 99.5 | GSM131178 | AtGen_D-10_1-FS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 15.7 | 99.5 | GSM131190 | AtGen_D-23_2-UL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 15.6 | 99.5 | GSM226268 | WT(Ler)_Dark_replicate2 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 15.5 | 99.5 | GSM131179 | AtGen_D-11_1-PS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 15.5 | 99.5 | ArrayExpress | E-MEXP-715-raw-cel-1121835915 | - | - | - |
| 15.2 | 99.4 | GSM134515 | Col-0_4day_dark_+lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 15.2 | 99.4 | GSM131198 | AtGen_D-32_2-WS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 15.2 | 99.4 | ArrayExpress | E-MEXP-715-raw-cel-1121836221 | - | - | - |
| 15.1 | 99.4 | GSM131194 | AtGen_D-28_2-RS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 14.9 | 99.4 | ArrayExpress | E-MEXP-1304-raw-cel-1530618003 | - | - | - |
| 14.8 | 99.4 | GSM131181 | AtGen_D-13_1-BS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 14.7 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661573138 | - | - | - |
| 14.4 | 99.4 | ArrayExpress | E-MEXP-265-raw-cel-414617783 | - | - | - |
| 14.3 | 99.4 | GSM131193 | AtGen_D-27_2-PS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 14.2 | 99.4 | GSM226270 | phyAphyB_Dark_replicate1 | GSE8951 | A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks | |
| 14.1 | 99.4 | GSM131211 | AtGen_D-45_3-BS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 14.0 | 99.4 | GSM133118 | RIKEN-YAMAUCHI1B | GSE5687 | AtGenExpress: Different temperature treatment of seeds | |
| 13.8 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661573117 | - | - | - |
| 13.6 | 99.4 | GSM131210 | AtGen_D-44_3-RS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 13.6 | 99.4 | GSM131213 | AtGen_D-47_3-US_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 13.3 | 99.4 | GSM131196 | AtGen_D-30_2-AS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 13.2 | 99.4 | ArrayExpress | E-MEXP-715-raw-cel-1121836247 | - | - | - |
| 13.2 | 99.4 | ArrayExpress | E-MEXP-1784-raw-cel-1661572888 | - | - | - |
| 12.9 | 99.3 | GSM131195 | AtGen_D-29_2-BS_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 12.9 | 99.3 | ArrayExpress | E-MEXP-1304-raw-cel-1530618171 | - | - | - |
| 12.8 | 99.3 | ArrayExpress | E-MEXP-1304-raw-cel-1530617935 | - | - | - |
| 12.8 | 99.3 | GSM131184 | AtGen_D-16_1-WS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 12.6 | 99.3 | GSM131182 | AtGen_D-14_1-AS_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 12.5 | 99.3 | ArrayExpress | E-MEXP-265-raw-cel-414619001 | - | - | - |
| 12.4 | 99.3 | ArrayExpress | E-MEXP-1784-raw-cel-1661573096 | - | - | - |
| 12.3 | 99.3 | ArrayExpress | E-MEXP-1304-raw-cel-1530618275 | - | - | - |
| 12.3 | 99.3 | ArrayExpress | E-MEXP-1784-raw-cel-1661572952 | - | - | - |
| 12.3 | 99.3 | ArrayExpress | E-MEXP-1304-raw-cel-1530618136 | - | - | - |
| 12.2 | 99.3 | GSM134520 | Col-0_4day_red illumination _+lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 12.0 | 99.3 | ArrayExpress | E-NASC-78-raw-cel-1463195235 | - | - | - |
| 11.8 | 99.3 | ArrayExpress | E-MEXP-1468-raw-cel-1591138754 | - | - | - |
| 11.6 | 99.3 | GSM134519 | Col-0_4day_red illumination_+lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 11.5 | 99.3 | GSM131183 | AtGen_D-15_1-US_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 11.4 | 99.3 | ArrayExpress | E-MEXP-1468-raw-cel-1591138655 | - | - | - |
| 11.4 | 99.3 | ArrayExpress | E-MEXP-1468-raw-cel-1591138721 | - | - | - |
| 11.4 | 99.3 | ArrayExpress | E-MEXP-1468-raw-cel-1591138688 | - | - | - |
| 11.2 | 99.2 | ArrayExpress | E-MEXP-1784-raw-cel-1661572909 | - | - | - |
| 11.1 | 99.2 | ArrayExpress | E-MEXP-1299-raw-cel-1519902994 | - | - | - |
| 11.1 | 99.2 | ArrayExpress | E-MEXP-265-raw-cel-414617890 | - | - | - |
| 11.0 | 99.2 | ArrayExpress | E-MEXP-1784-raw-cel-1661572978 | - | - | - |
| 10.9 | 99.2 | ArrayExpress | E-MEXP-1784-raw-cel-1661573186 | - | - | - |
| 10.8 | 99.2 | GSM134514 | Col-0_4day_dark_-lincomycin_rep2 | GSE5759 | red illumination w/o lincomycin | |
| 10.7 | 99.2 | ArrayExpress | E-MEXP-1784-raw-cel-1661573160 | - | - | - |
| 10.5 | 99.2 | GSM134517 | Col-0_4day_red illumination_-lincomycin_rep1 | GSE5759 | red illumination w/o lincomycin | |
| 10.5 | 99.2 | ArrayExpress | E-NASC-78-raw-cel-1463195187 | - | - | - |
| 10.5 | 99.2 | ArrayExpress | E-NASC-78-raw-cel-1463195219 | - | - | - |
| 10.2 | 99.2 | ArrayExpress | E-MEXP-1451-raw-cel-1585200202 | - | - | - |
| 10.2 | 99.2 | ArrayExpress | E-MEXP-1451-raw-cel-1585200170 | - | - | - |
| 10.2 | 99.2 | GSM131187 | AtGen_D-20_2-RL_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 10.2 | 99.2 | ArrayExpress | E-MEXP-265-raw-cel-414619106 | - | - | - |
| 10.2 | 99.2 | GSM131172 | AtGen_D-4_1-RL_REP1_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 10.1 | 99.2 | GSM292077 | Wt, dark sample, biological rep2 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 10.1 | 99.2 | GSM131197 | AtGen_D-31_2-US_REP2_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 10.0 | 99.2 | ArrayExpress | E-MEXP-1468-raw-cel-1591138853 | - | - | - |
| 10.0 | 99.2 | ArrayExpress | E-MEXP-1304-raw-cel-1530618104 | - | - | - |
| 9.9 | 99.1 | ArrayExpress | E-MEXP-1451-raw-cel-1585200234 | - | - | - |
| 9.9 | 99.1 | ArrayExpress | E-MEXP-715-raw-cel-1121836334 | - | - | - |
| 9.9 | 99.1 | GSM131212 | AtGen_D-46_3-AS_REP3_ATH1 | GSE5617 | AtGenExpress: Light treatments | |
| 9.8 | 99.1 | ArrayExpress | E-MEXP-1468-raw-cel-1591138820 | - | - | - |
| 9.8 | 99.1 | ArrayExpress | E-MEXP-1784-raw-cel-1661573173 | - | - | - |
| 9.6 | 99.1 | GSM184895 | Arabidopsis, root cells, cortex, standard conditions, replicate 1 | GSE7641 | Expression analysis of root cell-types after treatment with salt | |
| 9.6 | 99.1 | ArrayExpress | E-MEXP-265-raw-cel-414618900 | - | - | - |
| 9.5 | 99.1 | ArrayExpress | E-MEXP-265-raw-cel-414617695 | - | - | - |
| 9.4 | 99.1 | ArrayExpress | E-MEXP-265-raw-cel-414619318 | - | - | - |
| 9.3 | 99.1 | ArrayExpress | E-MEXP-1468-raw-cel-1591138886 | - | - | - |
| 9.3 | 99.1 | GSM184493 | Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 | GSE7631 | Cell-specific nitrogen responses in the Arabidopsis root | |
| 9.3 | 99.1 | GSM106970 | opr3_OPDA_22 hrs_Rep3 | GSE4733 | Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling | |
| 9.2 | 99.1 | ArrayExpress | E-MEXP-715-raw-cel-1121836361 | - | - | - |
| 9.1 | 99.1 | GSM106966 | opr3_OPDA_8 hrs_Rep3 | GSE4733 | Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling | |
| 9.0 | 99.1 | ArrayExpress | E-MEXP-1784-raw-cel-1661572965 | - | - | - |
| 9.0 | 99.1 | GSM292078 | Wt, dark sample, biological rep3 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
| 8.7 | 99.0 | GSM292076 | Wt, dark sample, biological rep1 | GSE11594 | Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings | |
