CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At3g12490

Gene name cysteine protease inhibitor, putative / cystatin, putative

Functional description Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.1 99.8 ArrayExpress E-MEXP-509-raw-cel-829148703 - - -
25.9 99.7 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
25.6 99.7 ArrayExpress E-MEXP-849-raw-cel-1181980982 - - -
25.0 99.6 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
22.0 99.6 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.5 99.6 ArrayExpress E-MEXP-849-raw-cel-1181980990 - - -
20.3 99.6 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
17.9 99.5 ArrayExpress E-MEXP-1474-raw-cel-1593932769 - - -
15.8 99.5 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
15.5 99.5 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.9 99.4 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
14.6 99.4 ArrayExpress E-MEXP-1474-raw-cel-1593932641 - - -
14.3 99.4 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
14.2 99.4 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.9 99.4 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.8 99.4 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.2 99.4 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
13.1 99.4 ArrayExpress E-MEXP-1474-raw-cel-1593932897 - - -
13.1 99.4 ArrayExpress E-MEXP-849-raw-cel-1181980998 - - -
11.9 99.3 ArrayExpress E-TABM-52-raw-cel-1583683022 - - -
11.8 99.3 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
11.8 99.3 ArrayExpress E-MEXP-1474-raw-cel-1593932737 - - -
11.3 99.3 ArrayExpress E-MEXP-1474-raw-cel-1593932865 - - -
11.1 99.2 ArrayExpress E-MEXP-1474-raw-cel-1593932609 - - -
11.0 99.2 ArrayExpress E-MEXP-1474-raw-cel-1593932801 - - -
11.0 99.2 ArrayExpress E-MEXP-1474-raw-cel-1593932833 - - -
10.9 99.2 ArrayExpress E-TABM-52-raw-cel-1583682926 - - -
10.8 99.2 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
10.6 99.2 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
10.5 99.2 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
10.5 99.2 ArrayExpress E-MEXP-1474-raw-cel-1593932545 - - -
10.5 99.2 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
10.4 99.2 ArrayExpress E-MEXP-1474-raw-cel-1593932929 - - -
10.4 99.2 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.9 99.1 ArrayExpress E-MEXP-1474-raw-cel-1593932513 - - -
9.7 99.1 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.7 99.1 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
9.4 99.1 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.3 99.1 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.1 99.1 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.0 99.1 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.9 99.0 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
8.9 99.0 GSM10483 lec1-1 Post-Mature Green Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
8.9 99.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.8 99.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.8 99.0 ArrayExpress E-MEXP-509-raw-cel-829148666 - - -
8.7 99.0 ArrayExpress E-MEXP-509-raw-cel-829148385 - - -

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.1	99.8	ArrayExpress	E-MEXP-509-raw-cel-829148703	-	-	-
25.9	99.7	GSM284387	Arabidopsis GSUS4b	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
25.6	99.7	ArrayExpress	E-MEXP-849-raw-cel-1181980982	-	-	-
25.0	99.6	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
22.0	99.6	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.5	99.6	ArrayExpress	E-MEXP-849-raw-cel-1181980990	-	-	-
20.3	99.6	GSM133119	RIKEN-YAMAUCHI2A	GSE5687	AtGenExpress: Different temperature treatment of seeds
17.9	99.5	ArrayExpress	E-MEXP-1474-raw-cel-1593932769	-	-	-
15.8	99.5	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
15.5	99.5	GSM311294	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.9	99.4	GSM10454	WT Post-Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
14.6	99.4	ArrayExpress	E-MEXP-1474-raw-cel-1593932641	-	-	-
14.3	99.4	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
14.2	99.4	GSM284386	Arabidopsis GSUS3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.9	99.4	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.8	99.4	GSM266666	Arabidopsis, root cells, columella root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.2	99.4	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
13.1	99.4	ArrayExpress	E-MEXP-1474-raw-cel-1593932897	-	-	-
13.1	99.4	ArrayExpress	E-MEXP-849-raw-cel-1181980998	-	-	-
11.9	99.3	ArrayExpress	E-TABM-52-raw-cel-1583683022	-	-	-
11.8	99.3	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
11.8	99.3	ArrayExpress	E-MEXP-1474-raw-cel-1593932737	-	-	-
11.3	99.3	ArrayExpress	E-MEXP-1474-raw-cel-1593932865	-	-	-
11.1	99.2	ArrayExpress	E-MEXP-1474-raw-cel-1593932609	-	-	-
11.0	99.2	ArrayExpress	E-MEXP-1474-raw-cel-1593932801	-	-	-
11.0	99.2	ArrayExpress	E-MEXP-1474-raw-cel-1593932833	-	-	-
10.9	99.2	ArrayExpress	E-TABM-52-raw-cel-1583682926	-	-	-
10.8	99.2	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.6	99.2	GSM10456	WT Post-Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
10.5	99.2	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.5	99.2	ArrayExpress	E-MEXP-1474-raw-cel-1593932545	-	-	-
10.5	99.2	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.4	99.2	ArrayExpress	E-MEXP-1474-raw-cel-1593932929	-	-	-
10.4	99.2	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.9	99.1	ArrayExpress	E-MEXP-1474-raw-cel-1593932513	-	-	-
9.7	99.1	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.7	99.1	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
9.4	99.1	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.3	99.1	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.1	99.1	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.0	99.1	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.9	99.0	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
8.9	99.0	GSM10483	lec1-1 Post-Mature Green Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
8.9	99.0	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.8	99.0	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.8	99.0	ArrayExpress	E-MEXP-509-raw-cel-829148666	-	-	-
8.7	99.0	ArrayExpress	E-MEXP-509-raw-cel-829148385	-	-	-

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Gene ID	At3g12490
Gene name	cysteine protease inhibitor, putative / cystatin, putative
Functional description	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).

Specifically-expressed experiments

Gene ID At3g12490 Gene name cysteine protease inhibitor, putative / cystatin, putative Functional description Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).

Gene ID At3g12490

Gene name cysteine protease inhibitor, putative / cystatin, putative

Functional description Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).