Specifically-expressed experiments

Gene ID	At3g11840
Gene name	PUB24 (PLANT U-BOX 24)
Functional description	Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
153.6	99.9	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
116.4	99.9	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
95.0	99.9	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
91.5	99.9	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
50.3	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
48.1	99.8	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
47.1	99.8	ArrayExpress	E-NASC-76-raw-cel-1359879132	-	-	-
46.2	99.8	ArrayExpress	E-MEXP-546-raw-cel-863289424	-	-	-
44.2	99.8	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
42.6	99.8	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
40.0	99.8	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
39.7	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
38.5	99.8	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
38.1	99.8	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
37.3	99.7	GSM39211	RRE2_Chitin1	GSE2169	rre1 and rre2 mutants
35.5	99.7	GSM142837	MG001_ATH1_A16-Torres-6N1	GSE6176	Impact of Type III effectors on plant defense responses
35.4	99.7	GSM142833	MG001_ATH1_A10-Torres-5N1	GSE6176	Impact of Type III effectors on plant defense responses
35.4	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.8	99.7	GSM142830	GM001_ATH1_A14-Torres-4N3_repeat2	GSE6176	Impact of Type III effectors on plant defense responses
34.6	99.7	GSM39203	Col_Chitin1	GSE2169	rre1 and rre2 mutants
33.2	99.7	GSM39212	RRE2_Chitin2	GSE2169	rre1 and rre2 mutants
33.2	99.7	GSM39205	Col_Chitin3	GSE2169	rre1 and rre2 mutants
32.2	99.7	GSM142839	MG001_ATH1_A18-Torres-6N6	GSE6176	Impact of Type III effectors on plant defense responses
31.6	99.7	GSM142838	MG001_ATH1_A17-Torres-6N3	GSE6176	Impact of Type III effectors on plant defense responses
31.6	99.7	GSM142853	MG001_ATH1_A6-Torres-2N6	GSE6176	Impact of Type III effectors on plant defense responses
31.5	99.7	GSM142829	GM001_ATH1_A11-Torres-5N3	GSE6176	Impact of Type III effectors on plant defense responses
31.3	99.7	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
30.9	99.7	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
30.7	99.7	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
29.0	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289586	-	-	-
26.0	99.7	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
25.9	99.7	GSM39206	Col_Chitin4	GSE2169	rre1 and rre2 mutants
24.9	99.6	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
24.2	99.6	ArrayExpress	E-MEXP-546-raw-cel-863289532	-	-	-
23.5	99.6	GSM142852	MG001_ATH1_A5-Torres-2N3	GSE6176	Impact of Type III effectors on plant defense responses
22.5	99.6	GSM39204	Col_Chitin2	GSE2169	rre1 and rre2 mutants
22.4	99.6	ArrayExpress	E-MEXP-547-raw-cel-863346376	-	-	-
22.4	99.6	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
21.7	99.6	GSM142850	MG001_ATH1_A3-Torres-1N6	GSE6176	Impact of Type III effectors on plant defense responses
20.8	99.6	ArrayExpress	E-MEXP-546-raw-cel-863289476	-	-	-
20.8	99.6	ArrayExpress	E-NASC-76-raw-cel-1359878951	-	-	-
20.2	99.6	GSM131139	AtGen_B-25_2-4-4_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
19.5	99.6	GSM131313	AtGen_6-3221_Saltstress-Roots-1.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
19.1	99.6	GSM134457	St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
19.1	99.6	GSM131112	AtGen_B-40_3-5-4_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
19.0	99.5	GSM134459	St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
18.4	99.5	GSM142846	MG001_ATH1_A27-Torres-9N1	GSE6176	Impact of Type III effectors on plant defense responses
18.4	99.5	GSM142644	MC002_ATH1_A8.1-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.3	99.5	ArrayExpress	E-NASC-76-raw-cel-1359879106	-	-	-
18.3	99.5	GSM131140	AtGen_B-26_2-5-4_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
17.9	99.5	GSM142855	MG001_ATH1_A8-Torres-3N3	GSE6176	Impact of Type III effectors on plant defense responses
17.2	99.5	GSM142835	MG001_ATH1_A13-Torres-4N1	GSE6176	Impact of Type III effectors on plant defense responses
16.9	99.5	GSM184519	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.8	99.5	GSM142641	MC002_ATH1_A7.1-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.7	99.5	ArrayExpress	E-MEXP-546-raw-cel-863289404	-	-	-
16.6	99.5	ArrayExpress	E-MEXP-547-raw-cel-863346403	-	-	-
16.2	99.5	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
15.5	99.5	ArrayExpress	E-MEXP-546-raw-cel-863289450	-	-	-
15.2	99.4	GSM131314	AtGen_6-3222_Saltstress-Roots-1.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
14.8	99.4	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.5	99.4	ArrayExpress	E-NASC-76-raw-cel-1359879028	-	-	-
14.3	99.4	GSM142623	MC002_ATH1_A1.1-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.0	99.4	GSM133029	BC482-1	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
14.0	99.4	GSM142642	MC002_ATH1_A7.2-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.6	99.4	GSM131111	AtGen_B-39_3-4-4_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
13.5	99.4	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.4	99.4	GSM134351	St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5752	Expression Level Polymorphism Project (ELP) - Col-0
13.3	99.4	GSM142649	MC002_ATH1_A9.3-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.2	99.4	GSM142851	MG001_ATH1_A4-Torres-2N1	GSE6176	Impact of Type III effectors on plant defense responses
13.1	99.4	GSM218587	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.1	99.4	GSM142646	MC002_ATH1_A8.3-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.0	99.4	GSM142831	GM001_ATH1_A30-Torres-9N6_repeat1	GSE6176	Impact of Type III effectors on plant defense responses
12.9	99.3	GSM142648	MC002_ATH1_A9.2-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.6	99.3	GSM142844	MG001_ATH1_A25-Torres-8N1	GSE6176	Impact of Type III effectors on plant defense responses
12.5	99.3	GSM142845	MG001_ATH1_A26-Torres-8N3	GSE6176	Impact of Type III effectors on plant defense responses
12.5	99.3	GSM142849	MG001_ATH1_A2-Torres-1N3	GSE6176	Impact of Type III effectors on plant defense responses
12.5	99.3	GSM134423	St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5756	Expression Level Polymorphism Project (ELP) - Van-0
12.3	99.3	GSM142834	MG001_ATH1_A12-Torres-5N6	GSE6176	Impact of Type III effectors on plant defense responses
11.9	99.3	GSM142647	MC002_ATH1_A9.1-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.9	99.3	GSM134403	St.Clair_1-100_268b_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
11.7	99.3	ArrayExpress	E-MEXP-739-raw-cel-1099467276	-	-	-
11.7	99.3	GSM322555	genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2	GSE12856	Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
11.7	99.3	GSM142836	MG001_ATH1_A15-Torres-4N6	GSE6176	Impact of Type III effectors on plant defense responses
11.6	99.3	GSM134441	St.Clair_1-66_380_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5757	Expression Level Polymorphism Project (ELP) - Kin-0
11.4	99.3	GSM134350	St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5752	Expression Level Polymorphism Project (ELP) - Col-0
11.4	99.3	GSM142645	MC002_ATH1_A8.2-dubos-aih	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.4	99.3	GSM142848	MG001_ATH1_A29-Torres-9N3	GSE6176	Impact of Type III effectors on plant defense responses
11.3	99.3	ArrayExpress	E-MEXP-546-raw-cel-863289506	-	-	-
11.2	99.2	GSM25866	A Treated - 1	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
11.1	99.2	ArrayExpress	E-MEXP-739-raw-cel-1099467240	-	-	-
11.0	99.2	GSM272992	flu over-tAPX 14-2, biological rep2	GSE10812	Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
11.0	99.2	GSM134405	St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
10.9	99.2	GSM134369	St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
10.9	99.2	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
10.8	99.2	GSM134458	St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
10.6	99.2	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
10.6	99.2	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.3	99.2	GSM25867	A Treated - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
10.3	99.2	GSM134404	St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
10.2	99.2	GSM142629	MC002_ATH1_A3.1-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2	99.2	GSM48127	Col_CSC3	GSE2538	Chitin Oligomer Experiment
10.1	99.2	GSM322556	genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3	GSE12856	Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
10.1	99.2	GSM322554	genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1	GSE12856	Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
10.1	99.2	GSM128671	Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.9	99.1	GSM184559	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.8	99.1	GSM142854	MG001_ATH1_A7-Torres-3N1	GSE6176	Impact of Type III effectors on plant defense responses
9.8	99.1	GSM134386	St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
9.6	99.1	GSM48126	Col_CSC2	GSE2538	Chitin Oligomer Experiment
9.6	99.1	GSM128683	Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.6	99.1	GSM131126	AtGen_B-12_1-5-4_REP1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.4	99.1	GSM134387	St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
9.4	99.1	GSM142654	MC002_ATH1_A11.2-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.4	99.1	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.3	99.1	GSM133030	BC482-2	GSE5684	AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
9.3	99.1	GSM48125	Col_CSC1	GSE2538	Chitin Oligomer Experiment
9.1	99.1	GSM275642	flu_60min	GSE10876	Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids
9.1	99.1	GSM218585	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.1	99.1	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.0	99.1	GSM142655	MC002_ATH1_A11.3-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.0	99.1	GSM142847	MG001_ATH1_A28-Torres-9N1	GSE6176	Impact of Type III effectors on plant defense responses
9.0	99.1	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.0	99.1	GSM128719	Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
8.9	99.0	GSM184499	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM218594	Whole roots 3.5hr KNO3 treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.8	99.0	ArrayExpress	E-MEXP-739-raw-cel-1099467249	-	-	-
8.8	99.0	GSM218591	Whole roots 3.5hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.8	99.0	GSM128672	Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.6	99.0	ArrayExpress	E-MEXP-739-raw-cel-1099467267	-	-	-
8.6	99.0	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-

Back to the CoP portal site

Back to the KAGIANA project homepage