Specifically-expressed experiments

Gene ID	At3g10040
Gene name	transcription factor
Functional description	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
226.7	100.0	GSM290756	root - 01% oxygen - 30min - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
213.2	100.0	GSM290755	root - 01% oxygen - 2h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
195.0	100.0	GSM131237	AtGen_6-0221_Control-Roots-1.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
154.9	99.9	GSM290753	root - 01% oxygen - 2h - E	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
136.8	99.9	GSM290762	root - 04% oxygen - 30min - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
121.9	99.9	GSM290760	root - 04% oxygen - 2h - D	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
92.6	99.9	GSM206277	Wild type, water treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
89.8	99.9	GSM206278	Wild type, water treatment, biological rep2	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
79.8	99.9	GSM245477	2 hr Hypoxia Stress Total RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
70.9	99.9	GSM245482	2 hr Hypoxia Stress IP RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
62.4	99.8	GSM131294	AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
55.4	99.8	GSM206279	Wild type, water treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
51.9	99.8	GSM206285	Chitin receptor mutant, water treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
51.2	99.8	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
43.7	99.8	GSM131238	AtGen_6-0222_Control-Roots-1.0h_Rep2	GSE5620	AtGenExpress: Stress Treatments (Control plants)
43.6	99.8	GSM131346	AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
43.2	99.8	GSM206283	Chitin receptor mutant, water treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
36.7	99.7	GSM40553	Total RNA - hypoxia stress	GSE2218	Changes in transcript abundance and association with large polysomes in response to hypoxia stress
34.1	99.7	GSM245487	2 hr Hypoxia Stress Total RNA Rep 3	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
33.6	99.7	GSM206281	Chitin receptor mutant, chitooctaose treatment, biological rep2	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
32.5	99.7	GSM206284	Chitin receptor mutant, water treatment, biological rep2	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
31.7	99.7	GSM206280	Chitin receptor mutant, chitooctaose treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
31.1	99.7	GSM142592	DB001_ATH1_A2-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
29.6	99.7	GSM311287	Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
29.6	99.7	GSM131293	AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
28.2	99.7	GSM290757	root - 01% oxygen - 30min - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
27.9	99.7	GSM245472	2 hr Hypoxia Stress IP RNA Rep 1	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
26.6	99.7	GSM245467	2 hr Hypoxia Stress Total RNA Rep 1	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
26.5	99.7	GSM184509	Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
26.3	99.7	GSM290761	root - 04% oxygen - 2h - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
26.2	99.7	GSM245492	2 hr Hypoxia Stress IP RNA Rep 3	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
25.2	99.6	GSM25874	IAA/A Treated - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
25.0	99.6	ArrayExpress	E-MEXP-1310-raw-cel-1534419254	-	-	-
24.4	99.6	ArrayExpress	E-MEXP-1310-raw-cel-1534419293	-	-	-
24.3	99.6	ArrayExpress	E-MEXP-1784-raw-cel-1661573074	-	-	-
23.8	99.6	GSM133306	RIKEN-NAKABAYASHI2B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
23.5	99.6	GSM131306	AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
23.4	99.6	GSM131249	AtGen_6-0421_Control-Roots-6.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
23.0	99.6	GSM290825	root - 04% oxygen - 30min - F	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
22.7	99.6	GSM142594	DB001_ATH1_A4-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
22.5	99.6	GSM206275	Wild type, chitooctaose treatment, biological rep2	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
22.4	99.6	GSM291021	root - 08% oxygen - 30min - C	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
22.3	99.6	GSM311288	Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
22.1	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.1	99.6	GSM131422	AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
22.0	99.6	GSM131345	AtGen_6-4321_Droughtstress-Roots-3.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
22.0	99.6	GSM131362	AtGen_6-5122_Genotoxicstress-Roots-0.5h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
21.6	99.6	GSM142596	DB001_ATH1_A6-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
21.4	99.6	GSM133772	Lindsey_1-24_torpedo-apical_Rep6_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.9	99.6	GSM206276	Wild type, chitooctaose treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
20.9	99.6	GSM131365	AtGen_6-5221_Genotoxicstress-Roots-1.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
20.3	99.6	GSM128693	Heinekamp_1-2_control-root_Rep1_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
20.1	99.6	GSM133308	RIKEN-NAKABAYASHI4A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
20.0	99.6	ArrayExpress	E-MEXP-1310-raw-cel-1534419208	-	-	-
19.7	99.6	GSM218592	Whole roots 3.5hr KCl control treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.6	99.6	ArrayExpress	E-MEXP-807-raw-cel-1173272894	-	-	-
19.5	99.6	GSM131305	AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
19.3	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.1	99.6	ArrayExpress	E-MEXP-1784-raw-cel-1661573032	-	-	-
18.7	99.5	GSM311283	Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
18.6	99.5	GSM184522	Stele root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.5	99.5	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.4	99.5	GSM133321	RIKEN-LI6A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
17.6	99.5	GSM142591	DB001_ATH1_A1-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
17.4	99.5	GSM206282	Chitin receptor mutant, chitooctaose treatment, biological rep3	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
17.2	99.5	GSM133307	RIKEN-NAKABAYASHI3A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
17.0	99.5	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.6	99.5	GSM133894	Schroeder_1-12_JS44-starve-96h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
16.4	99.5	GSM218595	Whole roots 3.5hr KNO3 treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.4	99.5	GSM206274	Wild type, chitooctaose treatment, biological rep1	GSE8319	A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
16.4	99.5	GSM131241	AtGen_6-0321_Control-Roots-3.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
16.2	99.5	GSM40555	Polysomal mRNA - Hypoxia stress	GSE2218	Changes in transcript abundance and association with large polysomes in response to hypoxia stress
16.2	99.5	GSM290758	root - 01% oxygen - 48h - A	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
15.9	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.7	99.5	GSM142593	DB001_ATH1_A3-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
15.7	99.5	GSM131298	AtGen_6-2422_Osmoticstress-Roots-6.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
15.4	99.5	GSM25873	IAA/A Treated - 1	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
15.4	99.5	GSM133310	RIKEN-NAKABAYASHI5B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
14.7	99.4	GSM131373	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
14.0	99.4	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.9	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.7	99.4	GSM184508	Pericycle root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.6	99.4	GSM245474	9 hr Hypoxia Stress IP RNA Rep 1	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
13.5	99.4	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.4	99.4	ArrayExpress	E-MEXP-1725-raw-cel-1669614572	-	-	-
13.1	99.4	ArrayExpress	E-MEXP-547-raw-cel-863346448	-	-	-
13.0	99.4	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
12.7	99.3	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.7	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.6	99.3	GSM173623	Col-0 rep2	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
12.5	99.3	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.4	99.3	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.1	99.3	ArrayExpress	E-MEXP-1310-raw-cel-1534419084	-	-	-
12.1	99.3	ArrayExpress	E-MEXP-1607-raw-cel-1620685770	-	-	-
12.1	99.3	ArrayExpress	E-MEXP-547-raw-cel-863346421	-	-	-
11.6	99.3	ArrayExpress	E-MEXP-1607-raw-cel-1620685778	-	-	-
11.4	99.3	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.4	99.3	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.1	99.2	GSM131242	AtGen_6-0322_Control-Roots-3.0h_Rep2	GSE5620	AtGenExpress: Stress Treatments (Control plants)
11.0	99.2	GSM131261	AtGen_6-1121_Cold(4°C)-Roots-0.5h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
11.0	99.2	ArrayExpress	E-MEXP-547-raw-cel-863346430	-	-	-
11.0	99.2	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.0	99.2	ArrayExpress	E-MEXP-547-raw-cel-863346457	-	-	-
10.8	99.2	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.7	99.2	GSM245484	9 hr Hypoxia Stress IP RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
10.7	99.2	GSM131342	AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
10.6	99.2	GSM133967	Fukuda_1-12_10B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.4	99.2	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
10.3	99.2	GSM157307	Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
10.3	99.2	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.2	99.2	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2	99.2	ArrayExpress	E-MEXP-1725-raw-cel-1669614613	-	-	-
10.1	99.2	GSM291019	root - 08% oxygen - 2h - C	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.9	99.1	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.8	99.1	GSM133305	RIKEN-NAKABAYASHI2A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
9.7	99.1	ArrayExpress	E-MEXP-1310-raw-cel-1534419123	-	-	-
9.6	99.1	GSM291023	root - 08% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
9.5	99.1	ArrayExpress	E-MEXP-1784-raw-cel-1661573053	-	-	-
9.5	99.1	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.5	99.1	ArrayExpress	E-MEXP-1310-raw-cel-1534419166	-	-	-
9.4	99.1	GSM131670	ATGE_48_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.2	99.1	GSM142655	MC002_ATH1_A11.3-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.2	99.1	ArrayExpress	E-MEXP-547-raw-cel-863346466	-	-	-
9.1	99.1	ArrayExpress	E-MEXP-1725-raw-cel-1669614592	-	-	-
9.1	99.1	GSM133319	RIKEN-LI5A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
9.1	99.1	GSM133719	Deeken_A-1-Deeke-Tum_SLD_REP1	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
9.0	99.1	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0	99.1	GSM245479	9 hr Hypoxia Stress Total RNA Rep 2	GSE9719	Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
8.7	99.0	GSM142653	MC002_ATH1_A11.1-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.6	99.0	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1

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