Specifically-expressed experiments

Gene ID At2g47780
Gene name rubber elongation factor (REF) protein-related
Functional description F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
107.799.9GSM134309Penfield_1-11_embryo-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
95.799.9GSM134308Penfield_1-10_embryo-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
90.999.9GSM153928ahg3-1 rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
88.299.9GSM134310Penfield_1-12_embryo-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
85.599.9GSM153924ABA control rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
68.599.9ArrayExpressE-MEXP-1304-raw-cel-1530618033---
67.899.9GSM153929ahg3-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
67.899.9GSM153926ahg1-1 rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
59.699.8GSM153925ABA control rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
50.199.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
50.099.8ArrayExpressE-NASC-78-raw-cel-1463195219---
50.099.8GSM131847Pracharoenwattana_1-4_ColA_Rep1_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
49.799.8ArrayExpressE-MEXP-1304-raw-cel-1530617900---
47.499.8ArrayExpressE-MEXP-1304-raw-cel-1530617935---
45.699.8GSM134303Penfield_1-5_endosperm-ABA_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
44.799.8ArrayExpressE-MEXP-1304-raw-cel-1530618003---
44.199.8ArrayExpressE-MEXP-1304-raw-cel-1530618104---
43.299.8GSM131845Pracharoenwattana_1-2_mdhB_Rep2_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
43.199.8ArrayExpressE-MEXP-1304-raw-cel-1530617971---
41.999.8GSM134302Penfield_1-4_endosperm-ABA_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
41.999.8ArrayExpressE-NASC-78-raw-cel-1463195267---
41.699.8GSM131849Pracharoenwattana_1-6_ColC_Rep3_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
40.699.8GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
40.699.8GSM173649mARF10 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
40.699.8ArrayExpressE-MEXP-1304-raw-cel-1530618171---
40.599.8GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
39.999.8GSM173628ARF10 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
39.499.8GSM173648mARF10 rep1GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
39.099.8ArrayExpressE-MEXP-1304-raw-cel-1530618235---
38.499.8GSM173624Col-0 rep3GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
37.099.7GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
36.899.7ArrayExpressE-MEXP-1304-raw-cel-1530618136---
36.599.7GSM299321Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
36.299.7GSM134313Penfield_1-15_embryo-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
35.799.7GSM299331pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
35.399.7GSM173629ARF10 rep3GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
35.299.7GSM299330pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
35.099.7GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
35.099.7GSM131848Pracharoenwattana_1-5_ColB_Rep2_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
35.099.7GSM299332pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
34.099.7ArrayExpressCornah_1-12_A4-wsx_Rep3_ATH1---
34.099.7GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
33.999.7ArrayExpressE-MEXP-1784-raw-cel-1661573138---
33.699.7ArrayExpressE-MEXP-1304-raw-cel-1530618275---
33.199.7GSM299323Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
33.099.7GSM173651mARF10 rep3GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
32.899.7GSM134311Penfield_1-13_embryo-ABA_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
32.699.7GSM299327pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
32.399.7GSM142695MH001_ATH1_A9-grevi-CT3GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
32.299.7ArrayExpressE-MEXP-1607-raw-cel-1620685810---
32.199.7GSM131844Pracharoenwattana_1-1_mdhA_Rep1_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
32.199.7GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
32.099.7ArrayExpressE-MEXP-1607-raw-cel-1620685778---
32.099.7ArrayExpressE-MEXP-1304-raw-cel-1530618068---
31.599.7ArrayExpressE-MEXP-1784-raw-cel-1661573117---
31.199.7GSM109108wild-type(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
30.999.7GSM299324Wild Type Germinating Seeds With Solvent Treatment Only Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
30.899.7GSM173626ARF10 rep1GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
30.899.7GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
30.099.7ArrayExpressE-MEXP-1784-raw-cel-1661573096---
30.099.7GSM173621Col-0 rep1GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seedsLink to GEO
29.999.7GSM109110vte1-1(Col-0) 1 day, biological rep1GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
29.899.7GSM299336Wild Type Germinating Seeds With Uniconazole Treatment Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.899.7ArrayExpressE-MEXP-1304-raw-cel-1530618203---
29.699.7GSM299326Wild Type Germinating Seeds With Solvent Treatment Only Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.599.7GSM131846Pracharoenwattana_1-3_mdhC_Rep3_ATH1GSE5641Peroxisomal mdh mutantLink to GEO
29.299.7GSM299325Wild Type Germinating Seeds With Solvent Treatment Only Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
29.299.7GSM153927ahg1-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
29.099.7GSM299337Wild Type Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.799.7GSM299335Wild Type Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.599.7GSM299322Wild Type Germinating Seeds With Solvent Treatment Only Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.399.7GSM299410pkl Mutant Germinating Seeds With Uniconazole Treatment Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
28.399.7GSM134315Penfield_1-17_embryo-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
28.099.7GSM109114vte2-1(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
27.899.7GSM305281control, biological replicate 1GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
27.799.7ArrayExpressE-MEXP-1310-raw-cel-1534419208---
27.099.7GSM299408pkl Mutant Germinating Seeds With Uniconazole Treatment Set 4 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
26.699.7ArrayExpressE-NASC-78-raw-cel-1463195187---
26.599.7GSM109115vte2-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
26.499.7GSM299329pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
26.499.7GSM134314Penfield_1-16_embryo-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
26.099.7ArrayExpressE-MEXP-1607-raw-cel-1620685770---
25.999.7GSM134312Penfield_1-14_embryo-ABA_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
25.699.7GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
25.499.6GSM109111vte1-1(Col-0) 1 day, biological rep2GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
24.999.6GSM299338Wild Type Germinating Seeds With Uniconazole Treatment Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
24.899.6GSM142696MH001_ATH1_A10-grevi-AT1GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
24.599.6GSM299409pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
24.599.6ArrayExpressE-MEXP-1468-raw-cel-1591138721---
24.399.6ArrayExpressE-MEXP-1468-raw-cel-1591139018---
24.299.6GSM299328pkl Mutant Germinating Seeds With Solvent Treatment Only Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
23.799.6ArrayExpressE-MEXP-1607-raw-cel-1620685802---
23.799.6GSM134515Col-0_4day_dark_+lincomycin_rep1GSE5759red illumination w/o lincomycinLink to GEO
23.499.6ArrayExpressE-NASC-78-raw-cel-1463195235---
23.499.6ArrayExpressE-MEXP-1310-raw-cel-1534419293---
23.499.6GSM109107wild-type(Col-0) 1 day, biological rep1GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
23.399.6GSM299334Wild Type Germinating Seeds With Uniconazole Treatment Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
23.399.6GSM109113vte2-1(Col-0) 1 day, biological rep1GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
23.199.6GSM134517Col-0_4day_red illumination_-lincomycin_rep1GSE5759red illumination w/o lincomycinLink to GEO
23.099.6ArrayExpressE-MEXP-1468-raw-cel-1591138985---
23.099.6GSM142698MH001_ATH1_A12-grevi-AT3GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
22.899.6GSM142697MH001_ATH1_A11-grevi-AT2GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
22.899.6GSM134516Col-0_4day_dark_+lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
22.299.6GSM299339pkl Mutant Germinating Seeds With Uniconazole Treatment Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
21.799.6GSM299340pkl Mutant Germinating Seeds With Uniconazole Treatment Set 2 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
21.599.6GSM299341pkl Mutant Germinating Seeds With Uniconazole Treatment Set 3 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
21.599.6GSM142693MH001_ATH1_A7-grevi-CT1GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
21.199.6GSM299333Wild Type Germinating Seeds With Uniconazole Treatment Set 1 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seedsLink to GEO
20.899.6GSM109109wild-type(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
20.899.6ArrayExpressE-MEXP-1607-raw-cel-1620685794---
20.799.6GSM134316Penfield_1-18_embryo-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
20.699.6GSM134513Col-0_4day_dark_-lincomycin_rep1GSE5759red illumination w/o lincomycinLink to GEO
20.599.6ArrayExpressE-MEXP-1310-raw-cel-1534419166---
20.499.6ArrayExpressE-MEXP-1784-raw-cel-1661572888---
20.399.6GSM142694MH001_ATH1_A8-grevi-CT2GSE6158Investigating the links between organic acid and carbohydrate regulation of gene expression.Link to GEO
20.399.6ArrayExpressE-MEXP-1607-raw-cel-1620685818---
20.399.6GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
19.199.6ArrayExpressE-MEXP-1784-raw-cel-1661572930---
19.099.5GSM134514Col-0_4day_dark_-lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
18.799.5GSM153923No ABA control rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABALink to GEO
18.699.5ArrayExpressE-MEXP-1468-raw-cel-1591138754---
18.499.5ArrayExpressE-MEXP-849-raw-cel-1181981038---
17.999.5GSM134519Col-0_4day_red illumination_+lincomycin_rep1GSE5759red illumination w/o lincomycinLink to GEO
17.899.5ArrayExpressE-MEXP-1607-raw-cel-1620685826---
17.599.5GSM134520Col-0_4day_red illumination _+lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
17.599.5GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
17.299.5ArrayExpressE-MEXP-1607-raw-cel-1620685834---
17.299.5GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
16.599.5ArrayExpressE-MEXP-849-raw-cel-1181981022---
16.499.5GSM226269WT(Ler)_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
15.599.5ArrayExpressE-MEXP-1310-raw-cel-1534419084---
15.499.5ArrayExpressE-MEXP-1784-raw-cel-1661572909---
14.999.4GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
14.899.4ArrayExpressE-MEXP-1310-raw-cel-1534419254---
14.399.4GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
13.899.4ArrayExpressE-MEXP-849-raw-cel-1181981014---
13.599.4ArrayExpressE-MEXP-1607-raw-cel-1620685786---
13.599.4GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.599.4GSM10484lec1-1 Post-Mature Green Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
13.599.4GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.099.4GSM159300CCA1-34_dark_early_rep1GSE6906Rhythmic growth explained by coincidence between internal and external cuesLink to GEO
13.099.4GSM134306Penfield_1-8_endosperm-PAC_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
12.899.3ArrayExpressE-MEXP-849-raw-cel-1181981030---
12.599.3GSM109112vte1-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of ArabidopsisLink to GEO
12.499.3ArrayExpressCornah_1-10_A2-irv_Rep3_ATH1---
12.299.3ArrayExpressE-MEXP-1784-raw-cel-1661573173---
12.199.3GSM226272phyAphyB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
12.099.3GSM134305Penfield_1-7_endosperm-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
11.799.3GSM134518Col-0_4day_red illumination_-lincomycin_rep2GSE5759red illumination w/o lincomycinLink to GEO
11.599.3GSM31920635S-MIF1 line #124, dark grown, replicate2GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
11.499.3ArrayExpressE-MEXP-1784-raw-cel-1661573186---
11.299.2ArrayExpressE-MEXP-1468-raw-cel-1591138655---
11.199.2GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
10.599.2ArrayExpressE-MEXP-1784-raw-cel-1661573053---
10.399.2ArrayExpressE-MEXP-1784-raw-cel-1661573074---
10.299.2ArrayExpressE-MEXP-1784-raw-cel-1661573160---
10.199.2GSM133322RIKEN-LI6BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
10.199.2GSM10483lec1-1 Post-Mature Green Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
10.099.2ArrayExpressE-NASC-78-raw-cel-1463195251---
9.899.1ArrayExpressE-MEXP-849-raw-cel-1181981046---
9.799.1ArrayExpressE-NASC-78-raw-cel-1463195171---
9.699.1GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
9.599.1GSM133321RIKEN-LI6AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
9.399.1GSM319208Dark-grown WT control (vector#1) GSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
9.099.1GSM226268WT(Ler)_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
9.099.1ArrayExpressE-NASC-78-raw-cel-1463195283---
9.099.1GSM305283control, biological replicate 2GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
9.099.1ArrayExpressE-MEXP-1468-raw-cel-1591138688---
8.899.0GSM133320RIKEN-LI5BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
8.799.0GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO



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