Specifically-expressed experiments

Gene ID	At2g47460
Gene name	MYB12 (MYB DOMAIN PROTEIN 12)
Functional description	"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
325.9	100.0	GSM131394	AtGen_6-7222_UV-Bstress-Roots-1.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
277.7	100.0	GSM131393	AtGen_6-7221_UV-Bstress-Roots-1.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
213.3	100.0	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
110.0	99.9	GSM184920	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
103.2	99.9	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
76.2	99.9	ArrayExpress	E-MEXP-1112-raw-cel-1590665585	-	-	-
71.6	99.9	GSM184909	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
70.3	99.9	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
69.0	99.9	GSM184632	Arabidopsis, whole roots, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
65.1	99.8	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
63.3	99.8	ArrayExpress	E-MEXP-1112-raw-cel-1590666053	-	-	-
63.0	99.8	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
59.1	99.8	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
58.0	99.8	ArrayExpress	E-MEXP-1112-raw-cel-1590666001	-	-	-
50.8	99.8	GSM184844	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
47.7	99.8	GSM184841	Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
45.0	99.8	ArrayExpress	E-MEXP-1112-raw-cel-1590665637	-	-	-
43.5	99.8	GSM184915	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
39.9	99.8	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
38.6	99.8	GSM184843	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
38.3	99.8	GSM131465	AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
35.6	99.7	GSM131390	AtGen_6-7122_UV-Bstress-Roots-0.5h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
35.0	99.7	GSM184896	Arabidopsis, root cells, cortex, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
34.8	99.7	GSM184842	Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
34.2	99.7	GSM184633	Arabidopsis, whole roots, 140 mM NaCl, replicate 2	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
31.7	99.7	GSM131389	AtGen_6-7121_UV-Bstress-Roots-0.5h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
27.7	99.7	GSM131398	AtGen_6-7322_UV-Bstress-Roots-3.0h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
27.4	99.7	GSM184930	Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
27.0	99.7	GSM131397	AtGen_6-7321_UV-Bstress-Roots-3.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
26.5	99.7	GSM184924	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
26.4	99.7	GSM131466	AtGen_6-9522_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
24.2	99.6	GSM184928	Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
23.1	99.6	GSM184929	Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
22.0	99.6	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
22.0	99.6	GSM265433	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
21.4	99.6	GSM184907	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
21.0	99.6	GSM184908	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
21.0	99.6	GSM184837	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7	GSE7639	Expression analysis of root developmental zones after treatment with salt
19.8	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.3	99.6	GSM184927	Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
19.1	99.6	GSM184933	Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
18.9	99.5	GSM265425	Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.6	99.5	ArrayExpress	E-MEXP-550-raw-cel-871342391	-	-	-
18.5	99.5	GSM265424	Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.4	99.5	GSM265412	Arabidopsis, whole roots, -Fe, replicate 2	GSE10496	Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
17.4	99.5	GSM133122	S0_12H_B	GSE5688	AtGenExpress: Response to sulfate limitation
17.4	99.5	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
17.2	99.5	GSM184916	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
16.8	99.5	ArrayExpress	E-MEXP-557-raw-cel-879731583	-	-	-
16.7	99.5	GSM184838	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8	GSE7639	Expression analysis of root developmental zones after treatment with salt
16.6	99.5	GSM184898	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
16.4	99.5	GSM75517	slr-1 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
16.2	99.5	GSM184634	Arabidopsis, root cells, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
16.1	99.5	GSM184934	Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
15.8	99.5	GSM184836	Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6	GSE7639	Expression analysis of root developmental zones after treatment with salt
15.6	99.5	GSM184903	Arabidopsis, root cells, stele, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.5	99.5	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
15.1	99.4	GSM142754	MJ001_ATH1_A5-jones-WT-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
14.9	99.4	ArrayExpress	E-MEXP-550-raw-cel-871342382	-	-	-
14.9	99.4	GSM184926	Arabidopsis, whole roots, standard conditions, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
14.4	99.4	GSM131434	AtGen_6-8525_Woundingstress-Roots-12.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
14.4	99.4	GSM184936	Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
14.3	99.4	GSM265422	Arabidopsis, root, longitudinal zone 3, standard conditions, rep1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
14.3	99.4	GSM131354	AtGen_6-4522_Droughtstress-Roots-12.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
14.2	99.4	GSM184496	Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.2	99.4	GSM184931	Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
14.1	99.4	GSM184507	Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.0	99.4	GSM184935	Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
14.0	99.4	GSM131405	AtGen_6-7521_UV-Bstress-Roots-12.0h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
13.9	99.4	ArrayExpress	E-MEXP-557-raw-cel-879731574	-	-	-
13.8	99.4	GSM266669	Arabidopsis, root cells, cortex, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.7	99.4	GSM184488	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.6	99.4	GSM184914	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
13.5	99.4	GSM265431	Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.2	99.4	GSM184510	Pericycle root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.1	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.0	99.4	GSM131378	AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
12.7	99.3	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
12.4	99.3	ArrayExpress	E-MEXP-557-raw-cel-879731511	-	-	-
12.0	99.3	GSM265432	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.9	99.3	GSM131564	ATGE_94_A	GSE5631	AtGenExpress: Developmental series (roots)
11.8	99.3	GSM266665	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
11.7	99.3	GSM131294	AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.6	99.3	ArrayExpress	E-MEXP-828-raw-cel-1156922659	-	-	-
11.6	99.3	GSM142751	MJ001_ATH1_A2-jones-WT2	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
11.5	99.3	GSM184925	Arabidopsis, whole roots, standard conditions, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
11.5	99.3	GSM218586	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.5	99.3	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
11.5	99.3	GSM131293	AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.4	99.3	GSM131353	AtGen_6-4521_Droughtstress-Roots-12.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
11.3	99.3	GSM184899	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
11.2	99.2	GSM131301	AtGen_6-2521_Osmoticstress-Roots-12.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.0	99.2	GSM142750	MJ001_ATH1_A1-jones-WT1	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
10.8	99.2	GSM131565	ATGE_94_B	GSE5631	AtGenExpress: Developmental series (roots)
10.7	99.2	ArrayExpress	E-MEXP-828-raw-cel-1156922634	-	-	-
10.7	99.2	GSM252681	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep3	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
10.6	99.2	GSM252675	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep1	GSE9996	Organ regeneration in plants is independent of stem cell niche activity
10.5	99.2	GSM131433	AtGen_6-8524_Woundingstress-Roots-12.0h_Rep1	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
10.5	99.2	GSM265468	Arabidopsis, whole roots, -Fe, 12 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
10.4	99.2	GSM131254	AtGen_6-0522_Control-Roots-12.0h_Rep2	GSE5620	AtGenExpress: Stress Treatments (Control plants)
10.4	99.2	GSM133121	S0_12H_A	GSE5688	AtGenExpress: Response to sulfate limitation
10.2	99.2	GSM75515	Col-0 6h MOCK replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.2	99.2	GSM133978	Birnbaum_1-8_StageII-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
10.1	99.2	GSM184913	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.0	99.2	GSM184504	Pericycle root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.9	99.1	GSM265466	Arabidopsis, whole roots, -Fe, 6 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
9.7	99.1	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7	99.1	GSM218294	At_NaCl_cpctry-2	GSE8787	Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
9.7	99.1	GSM184517	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	GSM184635	Arabidopsis, root cells, 140 mM NaCl, replicate 2	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
9.4	99.1	GSM131566	ATGE_94_C	GSE5631	AtGenExpress: Developmental series (roots)
9.4	99.1	GSM218587	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.2	99.1	GSM184490	Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.1	99.1	GSM266671	Arabidopsis, root cells, cortex, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.1	99.1	ArrayExpress	E-MEXP-550-raw-cel-871342418	-	-	-
9.1	99.1	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.1	99.1	GSM131253	AtGen_6-0521_Control-Roots-12.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
8.9	99.0	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
8.7	99.0	GSM265464	Arabidopsis, whole roots, -Fe, 3 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

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