Specifically-expressed experiments

Gene ID	At2g46830
Gene name	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)
Functional description	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.1	99.8	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
37.0	99.7	GSM159326	CCA1-34_dark_late_rep3	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
36.8	99.7	GSM142642	MC002_ATH1_A7.2-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
33.5	99.7	GSM142624	MC002_ATH1_A1.2-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.8	99.7	GSM142804	SS001_ATH1_A7-Smith-10	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
31.0	99.7	GSM253157	2h into an extended night	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
30.8	99.7	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
30.3	99.7	ArrayExpress	E-ATMX-33-raw-cel-1562596288	-	-	-
30.2	99.7	GSM142803	SS001_ATH1_A6-Smith-8-45	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
29.4	99.7	GSM131279	AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
28.7	99.7	GSM133405	Bramke_A5-warre-S2C	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
28.6	99.7	GSM131280	AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
26.5	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618308	-	-	-
26.3	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618514	-	-	-
25.8	99.7	GSM142815	SS002_ATH1_A7-smith-13h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
25.5	99.7	GSM128775	Eulgem_1-1_Col-0-untreated_Rep1_AG	GSE5532	Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2
25.0	99.6	GSM142814	SS002_ATH1_A6-smith-12h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
24.2	99.6	ArrayExpress	Evans_2-2_col-WT-cold_ATH1	-	-	-
23.2	99.6	GSM128776	Eulgem_1-3_Col-0-MKK2-w.t.4_Rep1_AG	GSE5532	Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2
22.5	99.6	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
22.5	99.6	GSM142631	MC002_ATH1_A3.3-dubos-6kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.1	99.6	GSM142625	MC002_ATH1_A1.3-dubos-wtx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.0	99.6	GSM318332	ML_35DAS_1	GSE12676	Arabidopsis thaliana Ler developmental series
21.9	99.6	GSM142641	MC002_ATH1_A7.1-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
21.8	99.6	GSM297382	At.StarchSD.WTSS3.SS3R1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
21.5	99.6	GSM183506	WT_for_MYB29/76_rep3	GSE7570	ATR1_like_Clade_OE_and_miR
20.9	99.6	GSM183514	MYB29_OE_rep2	GSE7570	ATR1_like_Clade_OE_and_miR
20.6	99.6	ArrayExpress	E-MEXP-185-raw-cel-358912110	-	-	-
20.3	99.6	GSM134774	Col-0_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
20.2	99.6	GSM134782	gun1-1_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
20.1	99.6	ArrayExpress	Evans_2-4_fab1-mut-cold_ATH1	-	-	-
20.0	99.6	GSM253158	4h into an extended nightA	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
19.5	99.6	GSM318345	ML_35DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
19.5	99.6	GSM318620	Apex_mir-3TCP_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
19.3	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530619115	-	-	-
18.9	99.5	GSM142805	SS001_ATH1_A8-Smith-11	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
18.8	99.5	GSM133407	Bramke_A1-warre-WTC	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
18.7	99.5	GSM318331	EL_14DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
18.3	99.5	GSM142663	NE001_ATH1_A1-Evans-w20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
18.2	99.5	GSM183504	WT_for_MYB29/76_rep1	GSE7570	ATR1_like_Clade_OE_and_miR
18.0	99.5	ArrayExpress	Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1	-	-	-
17.9	99.5	GSM134767	abi4-102_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
17.9	99.5	GSM253156	end of the night C	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
17.7	99.5	GSM318625	Apex_octa_18DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
17.2	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911998	-	-	-
17.2	99.5	GSM134772	Col-0_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
16.8	99.5	GSM142666	NE001_ATH1_A4-Evans-m20	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
16.8	99.5	ArrayExpress	E-MEXP-285-raw-cel-440782853	-	-	-
16.8	99.5	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
16.8	99.5	GSM142634	MC002_ATH1_A4.3-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.8	99.5	GSM197143	S14-150_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
16.7	99.5	ArrayExpress	Evans_2-10_col-aeq-cold_ATH1	-	-	-
16.5	99.5	ArrayExpress	E-MEXP-1344-raw-cel-1559561713	-	-	-
16.4	99.5	ArrayExpress	E-MEXP-849-raw-cel-1181980894	-	-	-
16.4	99.5	GSM142871	GW001_ATH1_A16-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
16.4	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911606	-	-	-
16.3	99.5	GSM197141	wt_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
15.9	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911774	-	-	-
15.9	99.5	GSM318624	Apex_octa_18DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
15.7	99.5	ArrayExpress	E-MEXP-185-raw-cel-358911662	-	-	-
15.7	99.5	ArrayExpress	E-ATMX-33-raw-cel-1562596264	-	-	-
15.6	99.5	GSM134777	Col-0_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
15.5	99.5	GSM142866	GW001_ATH1_A11-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
15.5	99.5	GSM318618	Apex_Col_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
15.3	99.4	GSM134779	gun1-1_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
15.2	99.4	ArrayExpress	E-MEXP-185-raw-cel-358911830	-	-	-
15.1	99.4	GSM197145	S58-2_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
14.7	99.4	ArrayExpress	E-MEXP-185-raw-cel-358911718	-	-	-
14.7	99.4	GSM142633	MC002_ATH1_A4.2-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.7	99.4	GSM134780	gun1-1_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
14.6	99.4	GSM142816	SS002_ATH1_A8-smith-14h	GSE6174	Gene expression and carbohydrate metabolism through the diurnal cycle
14.3	99.4	GSM297387	At.StarchSD.WTSS3.SS3R2L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
14.3	99.4	GSM74901	Wildtype_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
14.3	99.4	GSM142868	GW001_ATH1_A13-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
14.2	99.4	GSM197142	aba3-1_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
14.1	99.4	ArrayExpress	E-ATMX-33-raw-cel-1562596197	-	-	-
14.0	99.4	GSM226274	YHB_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
13.9	99.4	GSM297392	At.StarchSD.WTSS3.WTR1L1	GSE11708	Global gene expression in Atss3 mutant and WT over short day diurnal cycle
13.8	99.4	ArrayExpress	E-MEXP-185-raw-cel-358912054	-	-	-
13.7	99.4	GSM197146	S82-2_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
13.7	99.4	GSM134768	abi4-102_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
13.6	99.4	ArrayExpress	Evans_2-8_35s-FAD3-cold_ATH1	-	-	-
13.6	99.4	GSM226275	YHB_Dark_replicate3	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
13.6	99.4	GSM131276	AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
13.5	99.4	ArrayExpress	E-MEXP-1344-raw-cel-1559561683	-	-	-
13.5	99.4	ArrayExpress	E-MEXP-185-raw-cel-358911886	-	-	-
13.4	99.4	GSM245238	0hr DEX Replicate 3	GSE9702	Identification of putative targets of AP3/PI
13.4	99.4	ArrayExpress	E-ATMX-19-raw-cel-1375547513	-	-	-
13.3	99.4	GSM74900	Wildtype_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
13.2	99.4	GSM62704	arf6 arf8 flowers_stage 13-14	GSE2848	Auxin Response Factor mediated flower gene expression
13.2	99.4	GSM244456	Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep1_exp3	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
13.2	99.4	GSM317624	Apex_14DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
13.1	99.4	GSM77177	04h low CO2 + dark replicate A	GSE3423	Carbon fixation (endogenous sugar) and light-dependent gene expression
13.0	99.4	GSM142867	GW001_ATH1_A12-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.9	99.3	GSM134771	abi4-102_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.7	99.3	GSM142869	GW001_ATH1_A14-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.6	99.3	GSM134783	gun1-1_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.5	99.3	GSM134769	abi4-102_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
12.5	99.3	GSM128802	Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1	GSE5535	Response to cold, soil grown plants
12.4	99.3	GSM253155	end of the night B	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
12.4	99.3	ArrayExpress	E-ATMX-19-raw-cel-1375547411	-	-	-
12.4	99.3	ArrayExpress	E-ATMX-19-raw-cel-1375547428	-	-	-
12.3	99.3	GSM253154	end of the night A	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
12.3	99.3	GSM318621	Apex_mir-3TCP_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
12.2	99.3	GSM77055	00h Col-0 replicate A	GSE3416	Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
12.1	99.3	GSM197144	S15-118_2 with array type ATH1 from Affymetrix	GSE7961	affy_aba_ath1-Characterization of aba3-1 suppressor mutants
12.0	99.3	GSM142865	GW001_ATH1_A10-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
11.9	99.3	GSM184153	35S:MYB28_like_miR_rep1	GSE7570	ATR1_like_Clade_OE_and_miR
11.7	99.3	ArrayExpress	E-ATMX-19-raw-cel-1375547394	-	-	-
11.7	99.3	GSM62703	arf6 arf8 flowers_stage 11-12	GSE2848	Auxin Response Factor mediated flower gene expression
11.6	99.3	ArrayExpress	E-MEXP-849-raw-cel-1181980838	-	-	-
11.6	99.3	GSM133822	Walters_A-01-Kruger-WL1_REP1	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
11.5	99.3	GSM131303	AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.5	99.3	ArrayExpress	E-MEXP-185-raw-cel-358911942	-	-	-
11.4	99.3	ArrayExpress	E-MEXP-285-raw-cel-440782938	-	-	-
11.4	99.3	GSM317519	Apex_5DAS_1	GSE12676	Arabidopsis thaliana Ler developmental series
11.3	99.3	GSM131272	AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
11.0	99.2	GSM159321	CCA1-34_dark_early_rep3	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
10.9	99.2	ArrayExpress	E-MEXP-849-raw-cel-1181980942	-	-	-
10.9	99.2	GSM77056	00h Col-0 replicate B	GSE3416	Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
10.7	99.2	GSM128793	Zarka_1-5_MT-WT24HA_Rep1_ATH1	GSE5534	Response to cold, plate grown plants
10.7	99.2	GSM131275	AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
10.7	99.2	GSM133828	Walters_A-07-Kruger-ML1_REP1	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.6	99.2	GSM131219	Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1	GSE5618	Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
10.6	99.2	GSM244457	Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp4	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.5	99.2	GSM184151	ATR1_OE_rep2	GSE7570	ATR1_like_Clade_OE_and_miR
10.5	99.2	ArrayExpress	E-MEXP-849-raw-cel-1181980910	-	-	-
10.4	99.2	GSM244459	Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.4	99.2	GSM128801	Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1	GSE5535	Response to cold, soil grown plants
10.4	99.2	GSM268250	dor-ck-2, biological rep 2	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
10.3	99.2	ArrayExpress	E-ATMX-33-raw-cel-1562596241	-	-	-
10.3	99.2	GSM318622	Apex_mir-319b_17DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
10.0	99.2	GSM133829	Walters_A-08-Kruger-ML2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
10.0	99.2	GSM142870	GW001_ATH1_A15-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.7	99.1	GSM133823	Walters_A-02-Kruger-WL2_REP2	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.7	99.1	GSM131271	AtGen_6-1411_Cold(4°C)-Shoots-6.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
9.6	99.1	GSM133824	Walters_A-03-Kruger-WL3_REP3	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.6	99.1	ArrayExpress	E-ATMX-19-raw-cel-1375547445	-	-	-
9.5	99.1	ArrayExpress	Evans_2-1_col-WT-ambient_ATH1	-	-	-
9.5	99.1	GSM142864	GW001_ATH1_A9-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.4	99.1	GSM268251	WT-drought-2, biological rep 2	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
9.2	99.1	GSM74908	ice1_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
9.2	99.1	GSM74898	Wildtype_6H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
9.1	99.1	GSM318627	Apex_BLS>>TCP4_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
9.0	99.1	GSM244458	Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep1_exp3	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
9.0	99.1	GSM237293	Shoot control rep2	GSE9311	Gene expression in roots and shoots of plants grown on selenate
9.0	99.1	GSM94011	S5 third repeat	GSE4113	Arabidopsis plants with altered levels of alternative oxidase
8.9	99.0	GSM133827	Walters_A-06-Kruger-WH3_REP3	GSE5737	Carbohydrate- and redox-regulation of gene expression in a TPT mutant
8.9	99.0	GSM131217	Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1	GSE5618	Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
8.9	99.0	GSM253159	4h into an extended nightB	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
8.9	99.0	GSM131304	AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
8.9	99.0	GSM133403	Bramke_A3-warre-S6C	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
8.8	99.0	GSM128718	Pieterse_1-4_Control-72h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
8.7	99.0	GSM237295	Shoot Selenate rep2	GSE9311	Gene expression in roots and shoots of plants grown on selenate
8.7	99.0	GSM318619	Apex_Col_14DAS_2	GSE12691	Knockdown and overexpression of CIN-TCP genes
8.7	99.0	GSM128794	Zarka_1-6_MT-WT24HB_Rep2_ATH1	GSE5534	Response to cold, plate grown plants
8.7	99.0	GSM159304	CCA1-34_dark_late_rep2	GSE6906	Rhythmic growth explained by coincidence between internal and external cues
8.6	99.0	GSM74909	ice1_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome

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