Specifically-expressed experiments

Gene ID	At2g37640
Gene name	EXP3
Functional description	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
58.0	99.8	GSM173623	Col-0 rep2	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
51.9	99.8	GSM173628	ARF10 rep2	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
48.4	99.8	ArrayExpress	E-MEXP-849-raw-cel-1181981038	-	-	-
47.0	99.8	GSM133308	RIKEN-NAKABAYASHI4A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
44.3	99.8	ArrayExpress	E-MEXP-849-raw-cel-1181981046	-	-	-
42.7	99.8	GSM133307	RIKEN-NAKABAYASHI3A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
41.5	99.8	ArrayExpress	E-MEXP-849-raw-cel-1181981014	-	-	-
40.6	99.8	GSM133310	RIKEN-NAKABAYASHI5B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
37.4	99.7	GSM173649	mARF10 rep2	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
36.4	99.7	GSM133305	RIKEN-NAKABAYASHI2A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
35.9	99.7	GSM133309	RIKEN-NAKABAYASHI4B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
35.0	99.7	ArrayExpress	E-MEXP-849-raw-cel-1181981022	-	-	-
34.8	99.7	GSM133306	RIKEN-NAKABAYASHI2B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
32.9	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618033	-	-	-
32.6	99.7	GSM173629	ARF10 rep3	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
30.9	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618003	-	-	-
30.7	99.7	GSM173621	Col-0 rep1	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
29.0	99.7	ArrayExpress	E-MEXP-1607-raw-cel-1620685794	-	-	-
28.8	99.7	ArrayExpress	E-MEXP-1607-raw-cel-1620685778	-	-	-
28.1	99.7	GSM173624	Col-0 rep3	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
27.1	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530617935	-	-	-
26.2	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618068	-	-	-
25.5	99.7	ArrayExpress	E-MEXP-849-raw-cel-1181981030	-	-	-
25.5	99.7	ArrayExpress	E-MEXP-1304-raw-cel-1530618235	-	-	-
25.2	99.6	GSM173648	mARF10 rep1	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
24.8	99.6	GSM173626	ARF10 rep1	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
24.4	99.6	GSM131215	AtGen_D-17_2-DL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
24.1	99.6	ArrayExpress	E-MEXP-1299-raw-cel-1519902994	-	-	-
24.1	99.6	GSM131171	AtGen_D-3_1-PL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
23.9	99.6	GSM131169	AtGen_D-1_1-DL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
23.2	99.6	GSM299332	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
22.6	99.6	GSM131214	AtGen_D-48_3-WS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
22.6	99.6	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
22.4	99.6	GSM131186	AtGen_D-19_2-PL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
22.0	99.6	ArrayExpress	E-MEXP-1304-raw-cel-1530617971	-	-	-
22.0	99.6	ArrayExpress	E-MEXP-1607-raw-cel-1620685810	-	-	-
21.6	99.6	GSM299330	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
21.3	99.6	GSM173651	mARF10 rep3	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
21.2	99.6	GSM299321	Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
21.1	99.6	GSM109111	vte1-1(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
21.0	99.6	GSM131207	AtGen_D-41_3-DS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
21.0	99.6	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
20.6	99.6	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.5	99.6	GSM131210	AtGen_D-44_3-RS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
20.3	99.6	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
20.2	99.6	ArrayExpress	E-MEXP-849-raw-cel-1181981006	-	-	-
19.9	99.6	GSM131196	AtGen_D-30_2-AS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
19.9	99.6	GSM282693	arf2_brz_1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
19.7	99.6	GSM131179	AtGen_D-11_1-PS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
19.7	99.6	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
19.2	99.6	GSM131181	AtGen_D-13_1-BS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
19.1	99.6	GSM134516	Col-0_4day_dark_+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
18.9	99.5	GSM282703	arf2_brz_2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
18.9	99.5	GSM299323	Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
18.8	99.5	GSM131177	AtGen_D-9_1-DS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
18.5	99.5	ArrayExpress	E-MEXP-1784-raw-cel-1661573138	-	-	-
18.4	99.5	GSM131198	AtGen_D-32_2-WS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
18.2	99.5	ArrayExpress	E-MEXP-1468-raw-cel-1591138985	-	-	-
18.0	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530618171	-	-	-
17.8	99.5	ArrayExpress	E-MEXP-1304-raw-cel-1530618275	-	-	-
17.8	99.5	GSM131216	AtGen_D-26_1-FS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
17.7	99.5	ArrayExpress	E-MEXP-1607-raw-cel-1620685826	-	-	-
17.6	99.5	GSM131209	AtGen_D-43_3-PS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
17.5	99.5	ArrayExpress	E-MEXP-1607-raw-cel-1620685802	-	-	-
17.5	99.5	GSM134517	Col-0_4day_red illumination_-lincomycin_rep1	GSE5759	red illumination w/o lincomycin
17.5	99.5	GSM131199	AtGen_D-33_3-DL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
17.4	99.5	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.3	99.5	GSM134518	Col-0_4day_red illumination_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
17.3	99.5	GSM299329	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
17.3	99.5	GSM282698	Col_BRZ_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
16.9	99.5	ArrayExpress	E-MEXP-1784-raw-cel-1661573173	-	-	-
16.9	99.5	ArrayExpress	E-MEXP-1784-raw-cel-1661572952	-	-	-
16.7	99.5	GSM226269	WT(Ler)_Dark_replicate3	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
16.7	99.5	GSM299331	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
16.6	99.5	ArrayExpress	E-MEXP-1607-raw-cel-1620685770	-	-	-
16.5	99.5	GSM131192	AtGen_D-25_2-DS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.3	99.5	GSM131197	AtGen_D-31_2-US_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
16.2	99.5	GSM133321	RIKEN-LI6A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
16.2	99.5	ArrayExpress	E-MEXP-1468-raw-cel-1591138886	-	-	-
16.0	99.5	GSM131208	AtGen_D-42_3-FS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
15.4	99.5	GSM299327	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
15.2	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530618136	-	-	-
15.1	99.4	GSM131194	AtGen_D-28_2-RS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
15.0	99.4	GSM133319	RIKEN-LI5A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
15.0	99.4	ArrayExpress	E-MEXP-1784-raw-cel-1661573096	-	-	-
14.9	99.4	ArrayExpress	E-MEXP-1607-raw-cel-1620685786	-	-	-
14.4	99.4	GSM153924	ABA control rep1	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
14.4	99.4	GSM299328	pkl Mutant Germinating Seeds With Solvent Treatment Only Set 2 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
14.2	99.4	GSM109110	vte1-1(Col-0) 1 day, biological rep1	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
14.2	99.4	GSM299326	Wild Type Germinating Seeds With Solvent Treatment Only Set 6 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
14.2	99.4	ArrayExpress	E-MEXP-1784-raw-cel-1661573160	-	-	-
14.2	99.4	GSM131193	AtGen_D-27_2-PS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
14.0	99.4	GSM292077	Wt, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
14.0	99.4	GSM131175	AtGen_D-7_1-UL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
13.7	99.4	GSM109114	vte2-1(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
13.7	99.4	GSM131184	AtGen_D-16_1-WS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
13.6	99.4	GSM226268	WT(Ler)_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
13.6	99.4	GSM134514	Col-0_4day_dark_-lincomycin_rep2	GSE5759	red illumination w/o lincomycin
13.5	99.4	ArrayExpress	E-MEXP-1784-raw-cel-1661572978	-	-	-
13.5	99.4	GSM226271	phyAphyB_Dark_replicate2	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
13.5	99.4	GSM131212	AtGen_D-46_3-AS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
13.3	99.4	ArrayExpress	E-MEXP-1304-raw-cel-1530617900	-	-	-
12.9	99.3	GSM134515	Col-0_4day_dark_+lincomycin_rep1	GSE5759	red illumination w/o lincomycin
12.9	99.3	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
12.9	99.3	ArrayExpress	E-MEXP-1299-raw-cel-1519903146	-	-	-
12.9	99.3	ArrayExpress	E-MEXP-1784-raw-cel-1661572888	-	-	-
12.7	99.3	ArrayExpress	E-MEXP-1468-raw-cel-1591138853	-	-	-
12.7	99.3	GSM319208	Dark-grown WT control (vector#1)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
12.6	99.3	GSM282697	Col_BRZ_rep1	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
12.6	99.3	GSM282699	Col_BRZ_rep3	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
12.5	99.3	GSM131174	AtGen_D-6_1-AL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
12.5	99.3	GSM109108	wild-type(Col-0) 1 day, biological rep2	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
12.3	99.3	GSM131590	ATGE_35_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.3	99.3	GSM133120	RIKEN-YAMAUCHI2B	GSE5687	AtGenExpress: Different temperature treatment of seeds
12.2	99.3	ArrayExpress	E-MEXP-838-raw-cel-1160703990	-	-	-
12.1	99.3	ArrayExpress	E-MEXP-1304-raw-cel-1530618860	-	-	-
12.1	99.3	GSM131205	AtGen_D-39_3-UL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
11.9	99.3	ArrayExpress	E-MEXP-1607-raw-cel-1620685834	-	-	-
11.9	99.3	GSM292076	Wt, dark sample, biological rep1	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
11.8	99.3	ArrayExpress	E-MEXP-1607-raw-cel-1620685818	-	-	-
11.8	99.3	GSM133322	RIKEN-LI6B	GSE5701	AtGenExpress: Basic hormone treatment of seeds
11.7	99.3	ArrayExpress	E-MEXP-1304-raw-cel-1530618104	-	-	-
11.6	99.3	GSM134768	abi4-102_5day_-lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
11.5	99.3	ArrayExpress	E-MEXP-1468-raw-cel-1591139018	-	-	-
11.4	99.3	ArrayExpress	Cornah_1-11_A3-msx_Rep3_ATH1	-	-	-
11.4	99.3	ArrayExpress	E-MEXP-1304-raw-cel-1530619835	-	-	-
11.3	99.3	GSM153928	ahg3-1 rep1	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
11.3	99.3	GSM299324	Wild Type Germinating Seeds With Solvent Treatment Only Set 4 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
11.3	99.3	GSM319210	Dark-grown WT control (vector#7)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
11.1	99.2	ArrayExpress	E-MEXP-838-raw-cel-1160704054	-	-	-
11.1	99.2	ArrayExpress	E-MEXP-1304-raw-cel-1530618203	-	-	-
10.9	99.2	GSM131213	AtGen_D-47_3-US_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
10.7	99.2	GSM226272	phyAphyB_Dark_replicate3	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
10.5	99.2	ArrayExpress	E-MEXP-715-raw-cel-1121836247	-	-	-
10.5	99.2	ArrayExpress	E-MEXP-1784-raw-cel-1661573186	-	-	-
10.4	99.2	ArrayExpress	E-MEXP-1784-raw-cel-1661572965	-	-	-
10.0	99.2	GSM133317	RIKEN-LI4A	GSE5701	AtGenExpress: Basic hormone treatment of seeds
10.0	99.2	GSM317519	Apex_5DAS_1	GSE12676	Arabidopsis thaliana Ler developmental series
10.0	99.2	GSM142695	MH001_ATH1_A9-grevi-CT3	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
9.9	99.1	GSM153926	ahg1-1 rep1	GSE6638	Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
9.8	99.1	GSM142697	MH001_ATH1_A11-grevi-AT2	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
9.8	99.1	GSM299325	Wild Type Germinating Seeds With Solvent Treatment Only Set 5 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.8	99.1	GSM142693	MH001_ATH1_A7-grevi-CT1	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
9.8	99.1	GSM226267	WT(Ler)_Dark_replicate1	GSE8951	A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
9.7	99.1	GSM109107	wild-type(Col-0) 1 day, biological rep1	GSE4847	Expression data from tocopherol deficient seedlings of Arabidopsis
9.7	99.1	GSM317526	Apex_5DAS_2	GSE12676	Arabidopsis thaliana Ler developmental series
9.7	99.1	GSM134777	Col-0_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.7	99.1	GSM131211	AtGen_D-45_3-BS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.5	99.1	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.5	99.1	ArrayExpress	E-MEXP-1468-raw-cel-1591138655	-	-	-
9.5	99.1	GSM318618	Apex_Col_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
9.4	99.1	GSM25859	Negative Control - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
9.4	99.1	GSM319209	Dark-grown WT control (vector#4)	GSE12729	Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlings
9.4	99.1	GSM131172	AtGen_D-4_1-RL_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.4	99.1	GSM134767	abi4-102_5day_-lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.3	99.1	GSM282695	arf2_mock_rep2	GSE11216	Brassinazole treatment of arf2 and wild-type dark-grown seedlings
9.3	99.1	GSM299322	Wild Type Germinating Seeds With Solvent Treatment Only Set 2 of 6	GSE11852	Effect of uniconazole on wt and pkl mutant germinating seeds
9.3	99.1	GSM292078	Wt, dark sample, biological rep3	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
9.2	99.1	GSM134771	abi4-102_5day_+lincomycin_rep2	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.2	99.1	GSM134520	Col-0_4day_red illumination _+lincomycin_rep2	GSE5759	red illumination w/o lincomycin
9.1	99.1	GSM142696	MH001_ATH1_A10-grevi-AT1	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
9.1	99.1	GSM318620	Apex_mir-3TCP_14DAS_1	GSE12691	Knockdown and overexpression of CIN-TCP genes
9.1	99.1	ArrayExpress	E-MEXP-1784-raw-cel-1661573117	-	-	-
9.1	99.1	GSM142694	MH001_ATH1_A8-grevi-CT2	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
9.1	99.1	GSM292080	pif1-2, dark sample, biological rep2	GSE11594	Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
9.1	99.1	ArrayExpress	E-MEXP-1784-raw-cel-1661572992	-	-	-
9.0	99.1	GSM131204	AtGen_D-38_3-AL_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
8.9	99.0	GSM134309	Penfield_1-11_embryo-control_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
8.8	99.0	GSM134519	Col-0_4day_red illumination_+lincomycin_rep1	GSE5759	red illumination w/o lincomycin
8.8	99.0	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin

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