CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At2g35960

Gene name NHL12

Functional description Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.0 99.7 GSM142867 GW001_ATH1_A12-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
30.5 99.7 GSM142871 GW001_ATH1_A16-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
29.9 99.7 GSM128794 Zarka_1-6_MT-WT24HB_Rep2_ATH1 GSE5534 Response to cold, plate grown plants
27.3 99.7 GSM142868 GW001_ATH1_A13-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
26.0 99.7 GSM128801 Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1 GSE5535 Response to cold, soil grown plants
25.9 99.7 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
23.8 99.6 GSM128793 Zarka_1-5_MT-WT24HA_Rep1_ATH1 GSE5534 Response to cold, plate grown plants
23.0 99.6 GSM142870 GW001_ATH1_A15-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
22.7 99.6 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
22.1 99.6 GSM142865 GW001_ATH1_A10-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
20.4 99.6 GSM142866 GW001_ATH1_A11-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
20.3 99.6 ArrayExpress E-TABM-52-raw-cel-1583683454 - - -
20.2 99.6 GSM142864 GW001_ATH1_A9-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
19.3 99.6 GSM142869 GW001_ATH1_A14-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
19.3 99.6 ArrayExpress E-MEXP-1344-raw-cel-1559561713 - - -
18.4 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.2 99.5 GSM38669 NSPS GSE2268 Arabidopsis polysome microarray
17.1 99.5 GSM128802 Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1 GSE5535 Response to cold, soil grown plants
15.2 99.4 ArrayExpress E-TABM-52-raw-cel-1583683118 - - -
15.2 99.4 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
14.6 99.4 GSM128803 Zarka_2-7_MT-7DCA(SOIL)_Rep1_ATH1 GSE5535 Response to cold, soil grown plants
13.4 99.4 ArrayExpress E-TABM-52-raw-cel-1583683070 - - -
12.9 99.3 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
12.5 99.3 ArrayExpress E-TABM-52-raw-cel-1583683246 - - -
11.1 99.2 ArrayExpress E-TABM-52-raw-cel-1583683214 - - -
10.9 99.2 GSM128879 Mittler_1-3_control_Rep3_ATH1 GSE5539 Over-expression of MBF1c enhances stress tolerance
10.8 99.2 ArrayExpress E-MEXP-449-raw-cel-676423067 - - -
10.8 99.2 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
10.8 99.2 GSM128808 Zarka_3-4_MT-E2A_Rep1_ATH1 GSE5536 Response to CBF2 expression
10.3 99.2 ArrayExpress E-TABM-52-raw-cel-1583682990 - - -
10.3 99.2 GSM268246 dor-ck-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
10.3 99.2 ArrayExpress E-MEXP-1304-raw-cel-1530618308 - - -
10.2 99.2 GSM151695 Col-0 uninoculated, biological replicate 2 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
10.1 99.2 ArrayExpress E-MEXP-1344-raw-cel-1559561623 - - -
10.1 99.2 ArrayExpress E-TABM-52-raw-cel-1583683422 - - -
10.1 99.2 ArrayExpress E-MEXP-1344-raw-cel-1559561653 - - -
10.0 99.2 ArrayExpress E-TABM-52-raw-cel-1583683646 - - -
10.0 99.2 GSM268248 WT-ck-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
9.9 99.1 GSM128878 Mittler_1-2_control_Rep2_ATH1 GSE5539 Over-expression of MBF1c enhances stress tolerance
9.9 99.1 ArrayExpress E-MEXP-1304-raw-cel-1530618514 - - -
9.8 99.1 ArrayExpress E-MEXP-449-raw-cel-676422954 - - -
9.8 99.1 GSM151696 Col-0 uninoculated, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
9.6 99.1 GSM128877 Mittler_1-1_control_Rep1_ATH1 GSE5539 Over-expression of MBF1c enhances stress tolerance
9.6 99.1 GSM134448 St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
9.5 99.1 GSM134426 St.Clair_1-123_444_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
9.4 99.1 ArrayExpress E-TABM-52-raw-cel-1583683662 - - -
9.4 99.1 GSM128795 Zarka_1-7_MT-WT7DA_Rep1_ATH1 GSE5534 Response to cold, plate grown plants
9.3 99.1 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.3 99.1 ArrayExpress E-MEXP-1094-raw-cel-1379507393 - - -
9.3 99.1 GSM128807 Zarka_3-3_MT-E24B_Rep1_ATH1 GSE5536 Response to CBF2 expression
9.3 99.1 GSM128804 Zarka_2-8_MT-7DCB(SOIL)_Rep2_ATH1 GSE5535 Response to cold, soil grown plants
9.1 99.1 ArrayExpress E-MEXP-1345-raw-cel-1559561289 - - -
9.1 99.1 GSM170896 Col-0 -ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
9.0 99.1 ArrayExpress E-MEXP-1304-raw-cel-1530619084 - - -
8.9 99.0 ArrayExpress E-MEXP-546-raw-cel-863289641 - - -
8.9 99.0 ArrayExpress E-TABM-52-raw-cel-1583682958 - - -
8.9 99.0 ArrayExpress E-TABM-52-raw-cel-1583683374 - - -
8.9 99.0 GSM131280 AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.0	99.7	GSM142867	GW001_ATH1_A12-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
30.5	99.7	GSM142871	GW001_ATH1_A16-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
29.9	99.7	GSM128794	Zarka_1-6_MT-WT24HB_Rep2_ATH1	GSE5534	Response to cold, plate grown plants
27.3	99.7	GSM142868	GW001_ATH1_A13-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
26.0	99.7	GSM128801	Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1	GSE5535	Response to cold, soil grown plants
25.9	99.7	GSM133403	Bramke_A3-warre-S6C	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
23.8	99.6	GSM128793	Zarka_1-5_MT-WT24HA_Rep1_ATH1	GSE5534	Response to cold, plate grown plants
23.0	99.6	GSM142870	GW001_ATH1_A15-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
22.7	99.6	GSM133407	Bramke_A1-warre-WTC	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
22.1	99.6	GSM142865	GW001_ATH1_A10-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
20.4	99.6	GSM142866	GW001_ATH1_A11-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
20.3	99.6	ArrayExpress	E-TABM-52-raw-cel-1583683454	-	-	-
20.2	99.6	GSM142864	GW001_ATH1_A9-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
19.3	99.6	GSM142869	GW001_ATH1_A14-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
19.3	99.6	ArrayExpress	E-MEXP-1344-raw-cel-1559561713	-	-	-
18.4	99.5	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.2	99.5	GSM38669	NSPS	GSE2268	Arabidopsis polysome microarray
17.1	99.5	GSM128802	Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1	GSE5535	Response to cold, soil grown plants
15.2	99.4	ArrayExpress	E-TABM-52-raw-cel-1583683118	-	-	-
15.2	99.4	GSM74901	Wildtype_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
14.6	99.4	GSM128803	Zarka_2-7_MT-7DCA(SOIL)_Rep1_ATH1	GSE5535	Response to cold, soil grown plants
13.4	99.4	ArrayExpress	E-TABM-52-raw-cel-1583683070	-	-	-
12.9	99.3	GSM131279	AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
12.5	99.3	ArrayExpress	E-TABM-52-raw-cel-1583683246	-	-	-
11.1	99.2	ArrayExpress	E-TABM-52-raw-cel-1583683214	-	-	-
10.9	99.2	GSM128879	Mittler_1-3_control_Rep3_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
10.8	99.2	ArrayExpress	E-MEXP-449-raw-cel-676423067	-	-	-
10.8	99.2	GSM74900	Wildtype_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
10.8	99.2	GSM128808	Zarka_3-4_MT-E2A_Rep1_ATH1	GSE5536	Response to CBF2 expression
10.3	99.2	ArrayExpress	E-TABM-52-raw-cel-1583682990	-	-	-
10.3	99.2	GSM268246	dor-ck-1, biological rep 1	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
10.3	99.2	ArrayExpress	E-MEXP-1304-raw-cel-1530618308	-	-	-
10.2	99.2	GSM151695	Col-0 uninoculated, biological replicate 2	GSE6556	Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
10.1	99.2	ArrayExpress	E-MEXP-1344-raw-cel-1559561623	-	-	-
10.1	99.2	ArrayExpress	E-TABM-52-raw-cel-1583683422	-	-	-
10.1	99.2	ArrayExpress	E-MEXP-1344-raw-cel-1559561653	-	-	-
10.0	99.2	ArrayExpress	E-TABM-52-raw-cel-1583683646	-	-	-
10.0	99.2	GSM268248	WT-ck-1, biological rep 1	GSE10643	Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
9.9	99.1	GSM128878	Mittler_1-2_control_Rep2_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
9.9	99.1	ArrayExpress	E-MEXP-1304-raw-cel-1530618514	-	-	-
9.8	99.1	ArrayExpress	E-MEXP-449-raw-cel-676422954	-	-	-
9.8	99.1	GSM151696	Col-0 uninoculated, biological replicate 3	GSE6556	Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
9.6	99.1	GSM128877	Mittler_1-1_control_Rep1_ATH1	GSE5539	Over-expression of MBF1c enhances stress tolerance
9.6	99.1	GSM134448	St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
9.5	99.1	GSM134426	St.Clair_1-123_444_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5756	Expression Level Polymorphism Project (ELP) - Van-0
9.4	99.1	ArrayExpress	E-TABM-52-raw-cel-1583683662	-	-	-
9.4	99.1	GSM128795	Zarka_1-7_MT-WT7DA_Rep1_ATH1	GSE5534	Response to cold, plate grown plants
9.3	99.1	GSM268008	Col-0, Time 0, rep-A	GSE10646	BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.3	99.1	ArrayExpress	E-MEXP-1094-raw-cel-1379507393	-	-	-
9.3	99.1	GSM128807	Zarka_3-3_MT-E24B_Rep1_ATH1	GSE5536	Response to CBF2 expression
9.3	99.1	GSM128804	Zarka_2-8_MT-7DCB(SOIL)_Rep2_ATH1	GSE5535	Response to cold, soil grown plants
9.1	99.1	ArrayExpress	E-MEXP-1345-raw-cel-1559561289	-	-	-
9.1	99.1	GSM170896	Col-0 -ABA repl1	GSE7112	Abscisic acid effect on wild type and the abh1 mutant
9.0	99.1	ArrayExpress	E-MEXP-1304-raw-cel-1530619084	-	-	-
8.9	99.0	ArrayExpress	E-MEXP-546-raw-cel-863289641	-	-	-
8.9	99.0	ArrayExpress	E-TABM-52-raw-cel-1583682958	-	-	-
8.9	99.0	ArrayExpress	E-TABM-52-raw-cel-1583683374	-	-	-
8.9	99.0	GSM131280	AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)

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Gene ID	At2g35960
Gene name	NHL12
Functional description	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.

Specifically-expressed experiments

Gene ID At2g35960 Gene name NHL12 Functional description Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.

Gene ID At2g35960

Gene name NHL12

Functional description Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.