Specifically-expressed experiments

Gene ID	At2g35930
Gene name	PUB23 (PLANT U-BOX 23)
Functional description	Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
167.6	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
153.3	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
145.4	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
110.9	99.9	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
110.8	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
110.0	99.9	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
102.6	99.9	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
102.6	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
91.6	99.9	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
88.5	99.9	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
87.1	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
86.0	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
85.4	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
83.8	99.9	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
66.3	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
63.6	99.8	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
51.1	99.8	ArrayExpress	E-MEXP-1094-raw-cel-1379507273	-	-	-
49.5	99.8	GSM142853	MG001_ATH1_A6-Torres-2N6	GSE6176	Impact of Type III effectors on plant defense responses
47.5	99.8	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
44.4	99.8	GSM142851	MG001_ATH1_A4-Torres-2N1	GSE6176	Impact of Type III effectors on plant defense responses
44.0	99.8	GSM142852	MG001_ATH1_A5-Torres-2N3	GSE6176	Impact of Type III effectors on plant defense responses
42.6	99.8	ArrayExpress	E-NASC-76-raw-cel-1359879106	-	-	-
40.2	99.8	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
38.7	99.8	ArrayExpress	E-MEXP-1094-raw-cel-1379507313	-	-	-
35.0	99.7	GSM142839	MG001_ATH1_A18-Torres-6N6	GSE6176	Impact of Type III effectors on plant defense responses
33.2	99.7	GSM131134	AtGen_B-20_2-6-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
32.4	99.7	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
32.3	99.7	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
32.2	99.7	ArrayExpress	E-ATMX-28-raw-cel-1441104826	-	-	-
32.2	99.7	GSM184909	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
31.5	99.7	GSM142829	GM001_ATH1_A11-Torres-5N3	GSE6176	Impact of Type III effectors on plant defense responses
31.2	99.7	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
28.8	99.7	GSM39211	RRE2_Chitin1	GSE2169	rre1 and rre2 mutants
28.8	99.7	GSM142833	MG001_ATH1_A10-Torres-5N1	GSE6176	Impact of Type III effectors on plant defense responses
28.1	99.7	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
26.0	99.7	GSM131148	AtGen_B-34_3-6-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
25.6	99.7	ArrayExpress	E-NASC-76-raw-cel-1359878951	-	-	-
25.5	99.7	GSM39204	Col_Chitin2	GSE2169	rre1 and rre2 mutants
25.2	99.6	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
25.0	99.6	GSM39212	RRE2_Chitin2	GSE2169	rre1 and rre2 mutants
23.5	99.6	ArrayExpress	E-ATMX-28-raw-cel-1441104835	-	-	-
23.5	99.6	GSM142830	GM001_ATH1_A14-Torres-4N3_repeat2	GSE6176	Impact of Type III effectors on plant defense responses
23.1	99.6	GSM184907	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
22.7	99.6	GSM237282	Root Selenate rep 1	GSE9311	Gene expression in roots and shoots of plants grown on selenate
22.5	99.6	GSM131146	AtGen_B-32_3-4-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
22.4	99.6	ArrayExpress	E-MEXP-98-raw-cel-320188859	-	-	-
22.3	99.6	GSM237283	Root Selenate rep 2	GSE9311	Gene expression in roots and shoots of plants grown on selenate
21.5	99.6	ArrayExpress	E-NASC-76-raw-cel-1359879132	-	-	-
21.4	99.6	ArrayExpress	E-NASC-76-raw-cel-1359879158	-	-	-
21.2	99.6	GSM266665	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
20.7	99.6	GSM184635	Arabidopsis, root cells, 140 mM NaCl, replicate 2	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
20.6	99.6	GSM339543	Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5	GSE13469	Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
20.6	99.6	ArrayExpress	E-MEXP-1094-raw-cel-1379507553	-	-	-
19.6	99.6	GSM142838	MG001_ATH1_A17-Torres-6N3	GSE6176	Impact of Type III effectors on plant defense responses
18.6	99.5	GSM265472	Arabidopsis, whole roots, -Fe, 48 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
17.9	99.5	ArrayExpress	E-MEXP-547-raw-cel-863346376	-	-	-
17.1	99.5	GSM265473	Arabidopsis, whole roots, -Fe, 72 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
17.0	99.5	GSM226554	Slice12JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.0	99.5	ArrayExpress	E-MEXP-1094-raw-cel-1379507513	-	-	-
16.8	99.5	GSM265474	Arabidopsis, whole roots, -Fe, 72 hour, rep 2	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
16.5	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.5	99.5	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
16.2	99.5	GSM184908	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
16.2	99.5	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
16.1	99.5	ArrayExpress	E-MEXP-547-raw-cel-863346403	-	-	-
16.1	99.5	GSM265471	Arabidopsis, whole roots, -Fe, 48 hour, rep 1	GSE10502	Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
15.7	99.5	GSM184516	Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.6	99.5	ArrayExpress	E-MEXP-98-raw-cel-320189079	-	-	-
15.5	99.5	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.1	99.4	GSM131147	AtGen_B-33_3-5-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
15.0	99.4	GSM142834	MG001_ATH1_A12-Torres-5N6	GSE6176	Impact of Type III effectors on plant defense responses
15.0	99.4	GSM39203	Col_Chitin1	GSE2169	rre1 and rre2 mutants
14.8	99.4	GSM131132	AtGen_B-18_2-4-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.7	99.4	GSM39205	Col_Chitin3	GSE2169	rre1 and rre2 mutants
14.6	99.4	GSM142837	MG001_ATH1_A16-Torres-6N1	GSE6176	Impact of Type III effectors on plant defense responses
14.4	99.4	GSM39206	Col_Chitin4	GSE2169	rre1 and rre2 mutants
14.1	99.4	GSM131118	AtGen_B-4_1-4-1_REP_1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
14.0	99.4	GSM75513	Col-0 2h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
13.9	99.4	ArrayExpress	E-MEXP-1094-raw-cel-1379507233	-	-	-
13.8	99.4	ArrayExpress	E-NASC-76-raw-cel-1359878976	-	-	-
13.5	99.4	GSM142835	MG001_ATH1_A13-Torres-4N1	GSE6176	Impact of Type III effectors on plant defense responses
13.5	99.4	GSM266662	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.3	99.4	ArrayExpress	E-MEXP-98-raw-cel-320189024	-	-	-
13.1	99.4	GSM184634	Arabidopsis, root cells, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
13.0	99.4	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.9	99.3	GSM184896	Arabidopsis, root cells, cortex, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
12.8	99.3	GSM142850	MG001_ATH1_A3-Torres-1N6	GSE6176	Impact of Type III effectors on plant defense responses
12.6	99.3	GSM265433	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.6	99.3	ArrayExpress	E-NASC-76-raw-cel-1359878900	-	-	-
12.2	99.3	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
12.1	99.3	GSM184921	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.9	99.3	GSM75519	slr-1 0h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
11.8	99.3	GSM131133	AtGen_B-19_2-5-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.6	99.3	ArrayExpress	E-MEXP-98-raw-cel-320188804	-	-	-
11.3	99.3	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.1	99.2	GSM128672	Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.0	99.2	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.0	99.2	GSM265432	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1	GSE10497	Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.9	99.2	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.9	99.2	GSM131119	AtGen_B-5_1-5-1_REP_1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
10.9	99.2	ArrayExpress	E-MEXP-81-raw-cel-295433164	-	-	-
10.7	99.2	GSM266670	Arabidopsis, root cells, cortex, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.6	99.2	GSM128686	Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.5	99.2	ArrayExpress	E-MEXP-547-raw-cel-863346421	-	-	-
10.5	99.2	GSM266664	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.4	99.2	GSM128673	Underwood_1-25_hrpA-10e8-7h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.2	99.2	GSM266666	Arabidopsis, root cells, columella root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.1	99.2	GSM48125	Col_CSC1	GSE2538	Chitin Oligomer Experiment
10.1	99.2	ArrayExpress	E-MEXP-1094-raw-cel-1379507193	-	-	-
10.0	99.2	GSM184519	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.0	99.2	GSM142849	MG001_ATH1_A2-Torres-1N3	GSE6176	Impact of Type III effectors on plant defense responses
9.8	99.1	GSM266663	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.8	99.1	GSM131139	AtGen_B-25_2-4-4_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.6	99.1	GSM131127	AtGen_B-13_1-6-4_REP1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.3	99.1	GSM133968	Birnbaum_1-19_LRC-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
9.2	99.1	GSM131112	AtGen_B-40_3-5-4_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.2	99.1	GSM131120	AtGen_B-6_1-6-1_REP_1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.0	99.1	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
9.0	99.1	ArrayExpress	E-MEXP-547-raw-cel-863346448	-	-	-
8.9	99.0	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.9	99.0	GSM184893	Arabidopsis, root cells, columella root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
8.8	99.0	ArrayExpress	E-MEXP-547-raw-cel-863346367	-	-	-

Back to the CoP portal site

Back to the KAGIANA project homepage