Specifically-expressed experiments

Gene ID	At2g35700
Gene name	ERF38 (ERF FAMILY PROTEIN 38)
Functional description	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
158.3	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
55.5	99.8	GSM142661	MB002_ATH1_A1-Eland-ch1	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
54.4	99.8	GSM142662	MB002_ATH1_A2-Eland-ch2	GSE6153	Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
37.9	99.8	GSM133720	Deeken_A-2-Deeke-Inf_SLD_REP1	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
34.5	99.7	GSM176880	AWP_Control_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
29.7	99.7	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
29.3	99.7	GSM142626	MC002_ATH1_A2.1-dubos-wtc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.6	99.6	GSM142633	MC002_ATH1_A4.2-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.2	99.6	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.9	99.6	GSM131755	Quick_A28_1-2hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
23.5	99.6	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.4	99.6	ArrayExpress	E-ATMX-33-raw-cel-1562596241	-	-	-
22.3	99.6	ArrayExpress	E-TABM-52-raw-cel-1583683214	-	-	-
20.4	99.6	ArrayExpress	E-MEXP-1451-raw-cel-1585200170	-	-	-
20.0	99.6	ArrayExpress	E-TABM-52-raw-cel-1583683262	-	-	-
19.6	99.6	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
19.6	99.6	GSM142877	GW001_ATH1_A22-Warre-00f	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
19.3	99.6	GSM131831	Quick_A27_0-0hr_Rep2_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)
18.8	99.5	ArrayExpress	E-ATMX-33-raw-cel-1562596197	-	-	-
18.5	99.5	GSM131105	Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
18.1	99.5	ArrayExpress	E-TABM-52-raw-cel-1583683662	-	-	-
17.5	99.5	GSM131763	Quick_A62_1-12hr_Rep3_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
17.3	99.5	GSM131749	Quick_A2_1-2hr_Rep1_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
17.0	99.5	GSM133722	Deeken_A-2-Deeke-Inf_SLD_REP2	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
16.4	99.5	GSM131777	Quick_A11_2-12hr_Rep1_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
16.3	99.5	GSM142864	GW001_ATH1_A9-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
16.2	99.5	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.2	99.5	ArrayExpress	E-TABM-52-raw-cel-1583683454	-	-	-
15.9	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.8	99.5	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
15.7	99.5	GSM142866	GW001_ATH1_A11-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
15.6	99.5	GSM131784	Quick_A41_2-24hr_Rep2_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
15.2	99.4	GSM142867	GW001_ATH1_A12-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
15.1	99.4	GSM131789	Quick_A63_2-12hr_Rep3_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
14.9	99.4	GSM142634	MC002_ATH1_A4.3-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.7	99.4	GSM142871	GW001_ATH1_A16-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
14.6	99.4	ArrayExpress	E-MEXP-1344-raw-cel-1559561653	-	-	-
14.0	99.4	ArrayExpress	E-MEXP-1451-raw-cel-1585200202	-	-	-
13.9	99.4	ArrayExpress	E-ATMX-25-raw-cel-1441077398	-	-	-
13.8	99.4	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
13.8	99.4	GSM142870	GW001_ATH1_A15-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
13.7	99.4	ArrayExpress	E-TABM-52-raw-cel-1583682990	-	-	-
13.7	99.4	GSM131808	Quick_A24_3-96hr_Rep1_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
13.6	99.4	GSM131106	Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
13.5	99.4	GSM142865	GW001_ATH1_A10-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
13.4	99.4	GSM242960	Steroid day 3 (day3D2)	GSE9605	Target genes of AGAMOUS during early flower development in Arabidopsis
13.3	99.4	GSM142627	MC002_ATH1_A2.2-dubos-wtc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.1	99.4	GSM131764	Quick_A66_1-24hr_Rep3_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
12.9	99.3	GSM142868	GW001_ATH1_A13-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.6	99.3	ArrayExpress	E-TABM-52-raw-cel-1583683118	-	-	-
12.5	99.3	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.4	99.3	ArrayExpress	E-TABM-52-raw-cel-1583683246	-	-	-
12.3	99.3	GSM142869	GW001_ATH1_A14-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.3	99.3	GSM131830	Quick_A26_5-0hr_Rep1_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)
12.2	99.3	ArrayExpress	E-MEXP-1451-raw-cel-1585200234	-	-	-
12.2	99.3	GSM131833	Quick_A53_0-0hr_Rep3_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)
12.0	99.3	GSM131783	Quick_A37_2-12hr_Rep2_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
11.6	99.3	GSM131769	Quick_A88_1-12hr_Rep4_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
11.6	99.3	ArrayExpress	E-MEXP-1443-raw-cel-1581869921	-	-	-
11.6	99.3	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
11.6	99.3	GSM131815	Quick_A56_3-2hr_Rep3_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
11.5	99.3	GSM142601	BD001_ATH1_A5-DAVIE-T14	GSE6149	Targets of the mci genes.
11.5	99.3	GSM131750	Quick_A6_1-4hr-Rep1_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
11.2	99.2	GSM131804	Quick_A12_3-12hr_Rep1_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
11.0	99.2	ArrayExpress	E-MEXP-1345-raw-cel-1559561289	-	-	-
10.9	99.2	GSM131791	Quick_A71_2-48hr_Rep3_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
10.8	99.2	ArrayExpress	E-MEXP-1451-raw-cel-1585200266	-	-	-
10.7	99.2	GSM131753	Quick_A18_1-48hr_Rep1_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
10.6	99.2	GSM131817	Quick_A64_3-12hr_Rep3_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
10.5	99.2	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.5	99.2	GSM131824	Quick_A94_3-24hr_Rep4_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
10.5	99.2	GSM131761	Quick_A54_1-2hr_Rep3_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
10.5	99.2	GSM131793	Quick_A81_2-2hr_Rep4_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
10.4	99.2	GSM131757	Quick_A36_1-12hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
10.4	99.2	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.4	99.2	GSM131762	Quick_A58_1-4hr-Rep3_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
10.3	99.2	GSM131809	Quick_A30_3-2hr_Rep2_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
10.3	99.2	GSM131759	Quick_A44_1-48hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
10.2	99.2	GSM131780	Quick_A23_2-96hr_Rep1_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
10.1	99.2	GSM131803	Quick_A9_3-4hr-Rep1_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
10.0	99.2	ArrayExpress	E-TABM-52-raw-cel-1583683294	-	-	-
10.0	99.2	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.9	99.1	GSM131810	Quick_A34_3-4hr-Rep2_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
9.9	99.1	ArrayExpress	E-TABM-52-raw-cel-1583683070	-	-	-
9.8	99.1	GSM142628	MC002_ATH1_A2.3-dubos-wtc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.8	99.1	GSM131767	Quick_A80_1-2hr_Rep4_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.8	99.1	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
9.8	99.1	GSM131760	Quick_A48_1-96hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.7	99.1	GSM131782	Quick_A33_2-4hr-Rep2_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
9.7	99.1	GSM131781	Quick_A29_2-2hr_Rep2_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
9.7	99.1	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.5	99.1	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.5	99.1	GSM131756	Quick_A32_1-4hr-Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.4	99.1	GSM131834	Quick_A78_5-0hr_Rep3_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)
9.4	99.1	GSM38668	NSNP	GSE2268	Arabidopsis polysome microarray
9.3	99.1	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3	99.1	GSM131823	Quick_A90_3-12hr_Rep4_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
9.2	99.1	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.2	99.1	GSM131758	Quick_A40_1-24hr_Rep2_ATH1	GSE5636	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.2	99.1	GSM131802	Quick_A8_3-4hr-Rep1_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
9.0	99.1	GSM131832	Quick_A52_5-0hr_Rep2_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)
9.0	99.1	GSM133797	Bird_1-4_high-light-highCO2_Rep1_ATH1	GSE5733	Characterisation of genetic basis of changes in stomatal numbers at elevated atmospheric carbon dioxide concentrations
8.9	99.0	GSM131818	Quick_A68_3-24hr_Rep3_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
8.8	99.0	GSM131801	Quick_A4_3-2hr_Rep1_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
8.8	99.0	GSM142876	GW001_ATH1_A21-Warre-00f	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
8.8	99.0	ArrayExpress	E-MEXP-1344-raw-cel-1559561623	-	-	-
8.8	99.0	GSM131813	Quick_A46_3-48hr_Rep2_ATH1	GSE5638	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
8.8	99.0	ArrayExpress	E-TABM-52-raw-cel-1583683054	-	-	-
8.8	99.0	GSM131790	Quick_A67_2-24hr_Rep3_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
8.8	99.0	GSM131787	Quick_A55_2-2hr_Rep3_ATH1	GSE5637	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
8.7	99.0	GSM131835	Quick_A79_0-0hr_Rep4_ATH1	GSE5639	Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)

Back to the CoP portal site

Back to the KAGIANA project homepage