Specifically-expressed experiments

Gene ID At2g31380
Gene name STH
Functional description a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.499.8ArrayExpressE-MEXP-1344-raw-cel-1559561713---
40.999.8ArrayExpressE-MEXP-1304-raw-cel-1530618514---
37.999.8ArrayExpressE-MEXP-1304-raw-cel-1530618308---
37.999.8ArrayExpressE-MEXP-1304-raw-cel-1530619115---
34.499.7GSM74901Wildtype_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
32.999.7ArrayExpressEvans_2-4_fab1-mut-cold_ATH1---
32.699.7ArrayExpressEvans_2-2_col-WT-cold_ATH1---
31.799.7GSM74898Wildtype_6H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
28.099.7GSM183506WT_for_MYB29/76_rep3GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
26.299.7GSM253156end of the night CGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
26.099.7ArrayExpressEvans_2-8_35s-FAD3-cold_ATH1---
25.999.7ArrayExpressE-MEXP-513-raw-cel-829814414---
25.899.7ArrayExpressE-MEXP-1443-raw-cel-1581869515---
25.599.7ArrayExpressE-ATMX-33-raw-cel-1562596241---
25.399.6GSM142803SS001_ATH1_A6-Smith-8-45GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
24.999.6ArrayExpressEvans_2-12_fab3-7-8-mut-aeq-cold_ATH1---
24.899.6GSM74900Wildtype_24H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
23.399.6ArrayExpressE-MEXP-513-raw-cel-829814366---
23.299.6GSM7705500h Col-0 replicate AGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
22.999.6GSM7705600h Col-0 replicate BGSE3416Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leavesLink to GEO
22.199.6GSM142870GW001_ATH1_A15-Warre-2caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
21.699.6GSM74909ice1_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
21.299.6ArrayExpressEvans_2-10_col-aeq-cold_ATH1---
20.799.6GSM133407Bramke_A1-warre-WTCGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
19.699.6GSM131276AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
18.799.5GSM183514MYB29_OE_rep2GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
18.699.5GSM2531572h into an extended nightGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
18.599.5ArrayExpressE-ATMX-33-raw-cel-1562596197---
18.199.5GSM142871GW001_ATH1_A16-Warre-2caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
17.999.5GSM142814SS002_ATH1_A6-smith-12hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
17.799.5GSM128775Eulgem_1-1_Col-0-untreated_Rep1_AGGSE5532Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2Link to GEO
17.599.5GSM131279AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
17.199.5GSM131275AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
16.599.5GSM7718200h pgm (Col-0) mutant replicate BGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)Link to GEO
16.299.5ArrayExpressEvans_2-6_fab2-mut-cold_ATH1---
15.699.5GSM133403Bramke_A3-warre-S6CGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
15.499.5ArrayExpressE-MEXP-513-raw-cel-829814398---
15.499.5GSM253155end of the night BGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
14.999.4GSM133726McCormac_1-4_wildtype-NFtreated_Rep2_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
14.799.4GSM253154end of the night AGSE10016Expression data of Arabidopsis thaliana rosettes in an extended nightLink to GEO
14.799.4GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
14.699.4ArrayExpressE-MEXP-1345-raw-cel-1559561259---
14.699.4GSM131271AtGen_6-1411_Cold(4°C)-Shoots-6.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
14.299.4GSM131272AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
14.099.4GSM142867GW001_ATH1_A12-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
13.899.4GSM226274YHB_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
13.899.4GSM74908ice1_24H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
13.799.4GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
13.599.4GSM131280AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
13.599.4GSM318620Apex_mir-3TCP_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
13.499.4GSM142804SS001_ATH1_A7-Smith-10GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
13.399.4GSM142869GW001_ATH1_A14-Warre-3caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
13.199.4ArrayExpressE-MEXP-513-raw-cel-829814382---
13.199.4GSM133405Bramke_A5-warre-S2CGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
12.999.3GSM197146S82-2_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
12.899.3GSM317624Apex_14DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
12.799.3ArrayExpressE-MEXP-1344-raw-cel-1559561683---
12.599.3GSM128733Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
12.399.3ArrayExpressE-MEXP-1345-raw-cel-1559561229---
12.399.3GSM133728McCormac_1-6_mutant-NFtreated_Rep2_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
12.399.3GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
12.199.3GSM318622Apex_mir-319b_17DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
12.099.3GSM133723McCormac_1-1_wildtype-NFtreated_Rep1_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
12.099.3GSM133725McCormac_1-3_mutant-NFtreated_Rep1_ATH1GSE5726Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplastsLink to GEO
11.999.3GSM142866GW001_ATH1_A11-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
11.899.3GSM183504WT_for_MYB29/76_rep1GSE7570ATR1_like_Clade_OE_and_miRLink to GEO
11.899.3GSM142781AM002_ATH1_A6-MCCOR-WDBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
11.799.3GSM142865GW001_ATH1_A10-Warre-WcaGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
11.799.3GSM197142aba3-1_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
11.699.3GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
11.599.3ArrayExpressE-TABM-52-raw-cel-1583683022---
11.599.3GSM318345ML_35DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
11.599.3ArrayExpressE-MEXP-1304-raw-cel-1530618478---
11.499.3GSM318625Apex_octa_18DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
11.399.3GSM197141wt_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
11.399.3GSM197143S14-150_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
11.099.2ArrayExpressE-MEXP-1345-raw-cel-1559561289---
10.899.2GSM134775Col-0_5day_+lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
10.799.2GSM128793Zarka_1-5_MT-WT24HA_Rep1_ATH1GSE5534Response to cold, plate grown plantsLink to GEO
10.799.2GSM7718100h pgm (Col-0) mutant replicate AGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)Link to GEO
10.799.2GSM318332ML_35DAS_1GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
10.699.2GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.599.2GSM197145S58-2_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutantsLink to GEO
10.399.2GSM62703arf6 arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
10.299.2ArrayExpressE-MEXP-849-raw-cel-1181980838---
10.199.2GSM2452380hr DEX Replicate 3GSE9702Identification of putative targets of AP3/PILink to GEO
10.099.2GSM133720Deeken_A-2-Deeke-Inf_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
9.999.1GSM134777Col-0_5day_+lincomycin_rep2GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
9.899.1GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.899.1ArrayExpressE-MEXP-509-raw-cel-829148703---
9.799.1GSM318624Apex_octa_18DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
9.799.1GSM226275YHB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
9.599.1ArrayExpressE-MEXP-849-raw-cel-1181980894---
9.599.1GSM142868GW001_ATH1_A13-Warre-3caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
9.599.1GSM318623Apex_mir-319b_17DAS_2GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
9.399.1GSM318618Apex_Col_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genesLink to GEO
9.299.1GSM62696Columbia flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
9.199.1GSM142773AM002_ATH1_A8-MCCOR-GDBGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
9.199.1GSM226273YHB_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networksLink to GEO
8.999.0GSM134782gun1-1_5day_+lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycinLink to GEO
8.799.0GSM7717704h low CO2 + dark replicate AGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
8.799.0GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.799.0GSM142775AM002_ATH1_A10-MCCOR-ADAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO
8.699.0GSM142777AM002_ATH1_A2-MCCOR-WDAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.Link to GEO



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