CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At2g22200

Gene name AP2 domain-containing transcription factor

Functional description encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
276.9 100.0 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
237.7 100.0 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
172.0 100.0 GSM128655 Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
88.7 99.9 GSM157363 Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
64.9 99.8 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
59.0 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
57.9 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.8 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
49.2 99.8 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
47.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.3 99.8 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
39.2 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.2 99.7 ArrayExpress E-MEXP-546-raw-cel-863289641 - - -
33.9 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.4 99.7 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.4 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.2 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.6 99.7 ArrayExpress E-MEXP-1468-raw-cel-1591138985 - - -
26.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.2 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.9 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.6 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.0 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.7 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.3 99.6 GSM142731 CH001_ATH1_A010-Hampt-akc GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
24.1 99.6 ArrayExpress E-MEXP-1468-raw-cel-1591139018 - - -
22.9 99.6 ArrayExpress E-TABM-18-raw-cel-489543349 - - -
22.1 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.5 99.6 ArrayExpress E-TABM-18-raw-cel-489543333 - - -
19.9 99.6 GSM142730 CH001_ATH1_A009-Hampt-wsc_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
19.2 99.6 GSM157364 Ulker_2-7_WT-Col-0-L-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
18.5 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.5 99.5 GSM157361 Ulker_2-4_WRKY-KO-30-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
16.0 99.5 GSM217170 Low R:FR, 16 degrees GSE8745 Low R:FR treatment at 16 and 22 degrees
16.0 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.8 99.5 GSM157360 Ulker_2-3_WRKY-KO-07-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
14.5 99.4 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.3 99.4 GSM142721 CH001_ATH1_A001-Hampt-wsa GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.2 99.4 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
14.0 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0 99.4 GSM131190 AtGen_D-23_2-UL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
13.7 99.4 GSM131336 AtGen_6-4112_Droughtstress-Shoots-0.5h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
13.6 99.4 ArrayExpress E-MEXP-1468-raw-cel-1591138754 - - -
13.3 99.4 GSM133707 Short_1-3_ozone_Rep2_ATH1 GSE5722 Functional Genomics of Ozone Stress in Arabidopsis.
13.3 99.4 GSM157312 Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.8 99.3 ArrayExpress E-MEXP-1468-raw-cel-1591138721 - - -
12.7 99.3 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
12.5 99.3 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.4 99.3 GSM260878 A1-Greco-Bou GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
12.4 99.3 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.8 99.3 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3 99.3 ArrayExpress E-MEXP-828-raw-cel-1156922923 - - -
11.3 99.3 GSM142726 CH001_ATH1_A005-Hampt-wsb_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.7 99.2 GSM131339 AtGen_6-4211_Droughtstress-Shoots-1.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
10.2 99.2 GSM157321 Hammond_3-14_Potassium-starved-shoot_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
10.1 99.2 ArrayExpress Cornah_1-12_A4-wsx_Rep3_ATH1 - - -
10.1 99.2 GSM131189 AtGen_D-22_2-AL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
10.1 99.2 GSM152145 siz1-3 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.8 99.1 ArrayExpress E-ATMX-19-raw-cel-1375547445 - - -
9.6 99.1 ArrayExpress E-TABM-209-raw-cel-1316546535 - - -
9.5 99.1 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.4 99.1 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.3 99.1 GSM133888 Raghavan_1-2_1MM-1HR-A_Rep1_ATH1 GSE5743 Whole genome expression in response to herbicidal levels of 2,4-D application
9.1 99.1 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.0 99.1 GSM217174 Low R:FR, 22 degrees GSE8745 Low R:FR treatment at 16 and 22 degrees
8.8 99.0 GSM142696 MH001_ATH1_A10-grevi-AT1 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.
8.8 99.0 GSM131073 Edwards_1-8_54hr_Rep1_ATH1 GSE5612 Circadian expression of genes: modelling the Arabidopsis circadian clock
8.7 99.0 ArrayExpress E-TABM-18-raw-cel-489543037 - - -
8.6 99.0 GSM142733 CH001_ATH1_A012-Hampt-c1c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
8.6 99.0 GSM142693 MH001_ATH1_A7-grevi-CT1 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
276.9	100.0	GSM128675	Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
237.7	100.0	GSM128654	Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
172.0	100.0	GSM128655	Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
88.7	99.9	GSM157363	Ulker_2-6_WRKY-KO-13-Pst-DC3000_Rep1_ATH1	GSE6829	Group II-A WRKY transcription factors and early leaf senescence
64.9	99.8	GSM152135	Col-0 drought 1	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
59.0	99.8	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
57.9	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
55.8	99.8	GSM128676	Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
49.2	99.8	GSM152137	Col-0 drought 2	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
47.4	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.3	99.8	GSM152139	Col-0 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
39.2	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.2	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289641	-	-	-
33.9	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.4	99.7	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.4	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.2	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.6	99.7	ArrayExpress	E-MEXP-1468-raw-cel-1591138985	-	-	-
26.9	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.2	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.9	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.6	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.0	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.7	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.3	99.6	GSM142731	CH001_ATH1_A010-Hampt-akc	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
24.1	99.6	ArrayExpress	E-MEXP-1468-raw-cel-1591139018	-	-	-
22.9	99.6	ArrayExpress	E-TABM-18-raw-cel-489543349	-	-	-
22.1	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.5	99.6	ArrayExpress	E-TABM-18-raw-cel-489543333	-	-	-
19.9	99.6	GSM142730	CH001_ATH1_A009-Hampt-wsc_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
19.2	99.6	GSM157364	Ulker_2-7_WT-Col-0-L-Pst-DC3000_Rep1_ATH1	GSE6829	Group II-A WRKY transcription factors and early leaf senescence
18.5	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.5	99.5	GSM157361	Ulker_2-4_WRKY-KO-30-Pst-DC3000_Rep1_ATH1	GSE6829	Group II-A WRKY transcription factors and early leaf senescence
16.0	99.5	GSM217170	Low R:FR, 16 degrees	GSE8745	Low R:FR treatment at 16 and 22 degrees
16.0	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.8	99.5	GSM157360	Ulker_2-3_WRKY-KO-07-Pst-DC3000_Rep1_ATH1	GSE6829	Group II-A WRKY transcription factors and early leaf senescence
14.5	99.4	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
14.3	99.4	GSM142721	CH001_ATH1_A001-Hampt-wsa	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.2	99.4	GSM157315	Hammond_3-5_Potassium-starved-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
14.0	99.4	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.0	99.4	GSM131190	AtGen_D-23_2-UL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
13.7	99.4	GSM131336	AtGen_6-4112_Droughtstress-Shoots-0.5h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
13.6	99.4	ArrayExpress	E-MEXP-1468-raw-cel-1591138754	-	-	-
13.3	99.4	GSM133707	Short_1-3_ozone_Rep2_ATH1	GSE5722	Functional Genomics of Ozone Stress in Arabidopsis.
13.3	99.4	GSM157312	Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.8	99.3	ArrayExpress	E-MEXP-1468-raw-cel-1591138721	-	-	-
12.7	99.3	GSM134299	Penfield_1-1_endosperm-control_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
12.5	99.3	GSM218586	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.4	99.3	GSM260878	A1-Greco-Bou	GSE10322	Higher order transcriptional regulation conferred by the bountiful gain of function mutant
12.4	99.3	GSM133778	Lindsey_1-2_globular-apical_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.8	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3	99.3	ArrayExpress	E-MEXP-828-raw-cel-1156922923	-	-	-
11.3	99.3	GSM142726	CH001_ATH1_A005-Hampt-wsb_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.7	99.2	GSM131339	AtGen_6-4211_Droughtstress-Shoots-1.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
10.2	99.2	GSM157321	Hammond_3-14_Potassium-starved-shoot_Rep3_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
10.1	99.2	ArrayExpress	Cornah_1-12_A4-wsx_Rep3_ATH1	-	-	-
10.1	99.2	GSM131189	AtGen_D-22_2-AL_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
10.1	99.2	GSM152145	siz1-3 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.8	99.1	ArrayExpress	E-ATMX-19-raw-cel-1375547445	-	-	-
9.6	99.1	ArrayExpress	E-TABM-209-raw-cel-1316546535	-	-	-
9.5	99.1	GSM184498	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.4	99.1	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.3	99.1	GSM133888	Raghavan_1-2_1MM-1HR-A_Rep1_ATH1	GSE5743	Whole genome expression in response to herbicidal levels of 2,4-D application
9.1	99.1	GSM184500	Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM217174	Low R:FR, 22 degrees	GSE8745	Low R:FR treatment at 16 and 22 degrees
8.8	99.0	GSM142696	MH001_ATH1_A10-grevi-AT1	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.
8.8	99.0	GSM131073	Edwards_1-8_54hr_Rep1_ATH1	GSE5612	Circadian expression of genes: modelling the Arabidopsis circadian clock
8.7	99.0	ArrayExpress	E-TABM-18-raw-cel-489543037	-	-	-
8.6	99.0	GSM142733	CH001_ATH1_A012-Hampt-c1c	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
8.6	99.0	GSM142693	MH001_ATH1_A7-grevi-CT1	GSE6158	Investigating the links between organic acid and carbohydrate regulation of gene expression.

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Gene ID	At2g22200
Gene name	AP2 domain-containing transcription factor
Functional description	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.

Specifically-expressed experiments

Gene ID At2g22200 Gene name AP2 domain-containing transcription factor Functional description encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.

Gene ID At2g22200

Gene name AP2 domain-containing transcription factor

Functional description encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.