CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At2g21590

Gene name APL4

Functional description Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
501.7 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869515 - - -
314.7 100.0 ArrayExpress E-MEXP-1443-raw-cel-1581869573 - - -
165.6 100.0 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
127.7 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
124.4 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
116.5 99.9 GSM128706 Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
113.8 99.9 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
110.6 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.1 99.9 GSM260955 A2-LLOYD-PHO_REP2 GSE10326 Transcriptome analysis of pho3
93.0 99.9 GSM260953 A1-LLOYD-PHO_REP1 GSE10326 Transcriptome analysis of pho3
91.5 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
81.7 99.9 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
81.1 99.9 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
73.8 99.9 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
71.6 99.9 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
70.7 99.9 ArrayExpress E-TABM-52-raw-cel-1583683438 - - -
68.8 99.9 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
66.9 99.8 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
64.4 99.8 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
49.5 99.8 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.7 99.8 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.4 99.8 GSM38671 DSPS GSE2268 Arabidopsis polysome microarray
46.2 99.8 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
44.8 99.8 GSM131300 AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
40.7 99.8 GSM106909 opr3-JA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
40.6 99.8 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
40.5 99.8 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
39.6 99.8 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
37.4 99.7 GSM106966 opr3_OPDA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
36.3 99.7 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
34.4 99.7 GSM106967 opr3_OPDA_22 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
32.9 99.7 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
31.8 99.7 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
28.7 99.7 GSM106924 opr3_OPDA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.7 99.7 GSM106920 opr3_OPDA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.0 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
24.2 99.6 GSM106911 opr2_JA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.5 99.6 GSM106828 opr3_0 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
22.5 99.6 GSM106910 opr3_JA_2 hrs_rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
22.0 99.6 GSM106907 opr3_JA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.6 99.6 GSM133746 Shirras_1-8_Non-Calcicole_Rep4_ATH1 GSE5728 Environmental Genomics of calcicole-calcifuge physiology
19.7 99.6 ArrayExpress E-TABM-52-raw-cel-1583683070 - - -
18.6 99.5 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
18.6 99.5 GSM260956 A3-LLOYD-PHO_REP3 GSE10326 Transcriptome analysis of pho3
15.8 99.5 GSM187255 hy5_HL_C GSE7743 Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
15.0 99.4 ArrayExpress E-MEXP-475-raw-cel-680982503 - - -
14.5 99.4 GSM105206 sta1_no treatement_Rep2 GSE4662 STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress tolerance
14.2 99.4 GSM47028 dcl2-1 18 GSE2473 Small RNA biogenesis mutants
14.2 99.4 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.9 99.4 GSM47029 dcl2-1 19 GSE2473 Small RNA biogenesis mutants
13.9 99.4 GSM106970 opr3_OPDA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.6 99.3 GSM131327 AtGen_6-3611_Saltstress-Shoots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
12.2 99.3 GSM74908 ice1_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
12.1 99.3 GSM47047 rdr2-1 37 GSE2473 Small RNA biogenesis mutants
11.7 99.3 GSM128710 Shirras_3-7_WildEcotype-low-soil-pH-12.5mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
11.2 99.2 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.2 99.2 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.2 99.2 GSM47022 Col-0 12 GSE2473 Small RNA biogenesis mutants
9.7 99.1 ArrayExpress E-ATMX-30-raw-cel-1513696830 - - -
9.4 99.1 GSM47034 hen1 24 GSE2473 Small RNA biogenesis mutants
9.3 99.1 ArrayExpress E-MEXP-475-raw-cel-680982449 - - -
9.3 99.1 GSM131296 AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
9.2 99.1 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.2 99.1 GSM47021 Col-0 11 GSE2473 Small RNA biogenesis mutants
8.8 99.0 GSM47043 rdr1-1 33 GSE2473 Small RNA biogenesis mutants
8.7 99.0 GSM47020 Col-0 10 GSE2473 Small RNA biogenesis mutants

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
501.7	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869515	-	-	-
314.7	100.0	ArrayExpress	E-MEXP-1443-raw-cel-1581869573	-	-	-
165.6	100.0	GSM131303	AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
127.7	99.9	GSM269813	WT leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
124.4	99.9	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
116.5	99.9	GSM128706	Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1	GSE5523	Environmental Genomics of Calcicole-calcifuge physiology
113.8	99.9	GSM131304	AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
110.6	99.9	GSM269825	T8 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.1	99.9	GSM260955	A2-LLOYD-PHO_REP2	GSE10326	Transcriptome analysis of pho3
93.0	99.9	GSM260953	A1-LLOYD-PHO_REP1	GSE10326	Transcriptome analysis of pho3
91.5	99.9	GSM269821	WT leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
81.7	99.9	GSM269823	T6 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
81.1	99.9	GSM269827	C2 leaf-drought-rep2	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
73.8	99.9	GSM269819	C2 leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
71.6	99.9	GSM269817	T8 leaf-drought-rep1	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
70.7	99.9	ArrayExpress	E-TABM-52-raw-cel-1583683438	-	-	-
68.8	99.9	GSM269829	WT leaf-drought-rep3	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
66.9	99.8	GSM131299	AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
64.4	99.8	GSM106934	opr3_OPDA_8 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
49.5	99.8	GSM106827	opr3_0 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.7	99.8	GSM106833	opr3_JA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.4	99.8	GSM38671	DSPS	GSE2268	Arabidopsis polysome microarray
46.2	99.8	GSM106919	opr3_OPDA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
44.8	99.8	GSM131300	AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
40.7	99.8	GSM106909	opr3-JA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
40.6	99.8	GSM106825	opr3_0 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
40.5	99.8	GSM106921	opr3_OPDA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
39.6	99.8	GSM106908	opr3_JA_0.5 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
37.4	99.7	GSM106966	opr3_OPDA_8 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
36.3	99.7	GSM269831	T6 leaf-drought-rep3	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
34.4	99.7	GSM106967	opr3_OPDA_22 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
32.9	99.7	GSM106922	opr3_OPDA_2 hrs_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
31.8	99.7	GSM38670	DSNP	GSE2268	Arabidopsis polysome microarray
28.7	99.7	GSM106924	opr3_OPDA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.7	99.7	GSM106920	opr3_OPDA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
27.0	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
24.2	99.6	GSM106911	opr2_JA_2 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
23.5	99.6	GSM106828	opr3_0 hr_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
22.5	99.6	GSM106910	opr3_JA_2 hrs_rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
22.0	99.6	GSM106907	opr3_JA_0.5 hr_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
20.6	99.6	GSM133746	Shirras_1-8_Non-Calcicole_Rep4_ATH1	GSE5728	Environmental Genomics of calcicole-calcifuge physiology
19.7	99.6	ArrayExpress	E-TABM-52-raw-cel-1583683070	-	-	-
18.6	99.5	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
18.6	99.5	GSM260956	A3-LLOYD-PHO_REP3	GSE10326	Transcriptome analysis of pho3
15.8	99.5	GSM187255	hy5_HL_C	GSE7743	Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High Irradiance
15.0	99.4	ArrayExpress	E-MEXP-475-raw-cel-680982503	-	-	-
14.5	99.4	GSM105206	sta1_no treatement_Rep2	GSE4662	STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress tolerance
14.2	99.4	GSM47028	dcl2-1 18	GSE2473	Small RNA biogenesis mutants
14.2	99.4	GSM269833	T8 leaf-drought-rep3	GSE10670	Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.9	99.4	GSM47029	dcl2-1 19	GSE2473	Small RNA biogenesis mutants
13.9	99.4	GSM106970	opr3_OPDA_22 hrs_Rep3	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.6	99.3	GSM131327	AtGen_6-3611_Saltstress-Shoots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.2	99.3	GSM74908	ice1_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
12.1	99.3	GSM47047	rdr2-1 37	GSE2473	Small RNA biogenesis mutants
11.7	99.3	GSM128710	Shirras_3-7_WildEcotype-low-soil-pH-12.5mM-CaCl2_Rep1_ATH1	GSE5523	Environmental Genomics of Calcicole-calcifuge physiology
11.2	99.2	GSM106923	opr3_OPDA_2 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
10.2	99.2	GSM131591	ATGE_36_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
10.2	99.2	GSM47022	Col-0 12	GSE2473	Small RNA biogenesis mutants
9.7	99.1	ArrayExpress	E-ATMX-30-raw-cel-1513696830	-	-	-
9.4	99.1	GSM47034	hen1 24	GSE2473	Small RNA biogenesis mutants
9.3	99.1	ArrayExpress	E-MEXP-475-raw-cel-680982449	-	-	-
9.3	99.1	GSM131296	AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
9.2	99.1	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.2	99.1	GSM47021	Col-0 11	GSE2473	Small RNA biogenesis mutants
8.8	99.0	GSM47043	rdr1-1 33	GSE2473	Small RNA biogenesis mutants
8.7	99.0	GSM47020	Col-0 10	GSE2473	Small RNA biogenesis mutants

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Gene ID	At2g21590
Gene name	APL4
Functional description	Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.