CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At2g19990

Gene name PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)

Functional description Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
448.1 100.0 GSM218595 Whole roots 3.5hr KNO3 treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
295.2 100.0 ArrayExpress E-MEXP-1797-raw-cel-1669768048 - - -
230.6 100.0 GSM218592 Whole roots 3.5hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
222.3 100.0 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
220.7 100.0 GSM218593 Whole roots 3.5hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
210.7 100.0 ArrayExpress E-MEXP-1797-raw-cel-1669767958 - - -
207.7 100.0 ArrayExpress E-MEXP-1797-raw-cel-1669768066 - - -
189.7 100.0 ArrayExpress E-MEXP-1797-raw-cel-1669767985 - - -
154.4 99.9 GSM184560 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
148.1 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669767949 - - -
140.9 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669767994 - - -
140.7 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669767976 - - -
133.2 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669768057 - - -
126.0 99.9 GSM218594 Whole roots 3.5hr KNO3 treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
122.4 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669768003 - - -
121.7 99.9 GSM184561 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.6 99.9 GSM218591 Whole roots 3.5hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.0 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669768012 - - -
87.3 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669768075 - - -
82.3 99.9 ArrayExpress E-ATMX-13-raw-cel-1556149935 - - -
79.2 99.9 ArrayExpress E-ATMX-31-raw-cel-1516947882 - - -
76.9 99.9 ArrayExpress E-MEXP-1797-raw-cel-1669768084 - - -
62.8 99.8 ArrayExpress E-MEXP-1797-raw-cel-1669768021 - - -
61.8 99.8 ArrayExpress E-ATMX-31-raw-cel-1516947899 - - -
47.7 99.8 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
42.5 99.8 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
42.2 99.8 GSM184559 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.3 99.8 ArrayExpress E-MEXP-1797-raw-cel-1669767967 - - -
37.5 99.7 ArrayExpress E-ATMX-13-raw-cel-1556149823 - - -
36.0 99.7 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
32.7 99.7 ArrayExpress E-ATMX-13-raw-cel-1556149839 - - -
31.3 99.7 ArrayExpress E-MEXP-1797-raw-cel-1669768039 - - -
30.6 99.7 ArrayExpress E-ATMX-13-raw-cel-1556149855 - - -
30.5 99.7 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
29.1 99.7 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
28.1 99.7 ArrayExpress E-ATMX-13-raw-cel-1556149919 - - -
25.6 99.7 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
25.2 99.6 ArrayExpress E-ATMX-13-raw-cel-1556149727 - - -
25.0 99.6 ArrayExpress E-ATMX-13-raw-cel-1556149775 - - -
24.5 99.6 ArrayExpress E-ATMX-31-raw-cel-1516947916 - - -
23.5 99.6 ArrayExpress E-ATMX-13-raw-cel-1556149903 - - -
22.6 99.6 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
22.2 99.6 ArrayExpress E-ATMX-13-raw-cel-1556149871 - - -
22.1 99.6 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
18.3 99.5 GSM133721 Deeken_A-1-Deeke-Tum_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
18.0 99.5 GSM134202 Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
16.4 99.5 GSM133949 Murray_2-5_T8-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
15.2 99.4 ArrayExpress E-ATMX-13-raw-cel-1556149743 - - -
15.1 99.4 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
14.7 99.4 ArrayExpress E-ATMX-13-raw-cel-1556149807 - - -
14.5 99.4 GSM131381 AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
14.4 99.4 GSM131417 AtGen_6-8124_Woundingstress-Roots-0.5h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
13.8 99.4 ArrayExpress E-ATMX-13-raw-cel-1556149887 - - -
13.2 99.4 GSM131469 AtGen_6-9621_Heatstress(3h)+21hrecovery-Roots-24.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
13.1 99.4 ArrayExpress E-ATMX-13-raw-cel-1556149791 - - -
13.0 99.4 GSM131233 AtGen_6-0121_Control-Roots-0.5h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
12.6 99.3 GSM131386 AtGen_6-7722_UV-Bstress-Roots-0.25h_Rep2 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
11.8 99.3 GSM131269 AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
11.8 99.3 GSM131422 AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
11.0 99.2 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 GSM131385 AtGen_6-7721_UV-Bstress-Roots-0.25h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
10.5 99.2 GSM131266 AtGen_6-1222_Cold(4°C)-Roots-1.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
10.3 99.2 GSM131466 AtGen_6-9522_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
10.2 99.2 GSM131241 AtGen_6-0321_Control-Roots-3.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
10.2 99.2 GSM9605 iaa17-6_+IAA_1 GSE629 Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
9.6 99.1 ArrayExpress E-MEXP-1797-raw-cel-1669768030 - - -
9.6 99.1 GSM131465 AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
9.0 99.1 GSM9612 axr3-1_+IAA_2 GSE629 Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
8.9 99.0 ArrayExpress E-MEXP-1797-raw-cel-1669767940 - - -

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
448.1	100.0	GSM218595	Whole roots 3.5hr KNO3 treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
295.2	100.0	ArrayExpress	E-MEXP-1797-raw-cel-1669768048	-	-	-
230.6	100.0	GSM218592	Whole roots 3.5hr KCl control treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
222.3	100.0	GSM218596	Whole roots 3.5hr KNO3 treated then frozen, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
220.7	100.0	GSM218593	Whole roots 3.5hr KCl control treated then frozen, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
210.7	100.0	ArrayExpress	E-MEXP-1797-raw-cel-1669767958	-	-	-
207.7	100.0	ArrayExpress	E-MEXP-1797-raw-cel-1669768066	-	-	-
189.7	100.0	ArrayExpress	E-MEXP-1797-raw-cel-1669767985	-	-	-
154.4	99.9	GSM184560	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
148.1	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669767949	-	-	-
140.9	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669767994	-	-	-
140.7	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669767976	-	-	-
133.2	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669768057	-	-	-
126.0	99.9	GSM218594	Whole roots 3.5hr KNO3 treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
122.4	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669768003	-	-	-
121.7	99.9	GSM184561	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
118.6	99.9	GSM218591	Whole roots 3.5hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
96.0	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669768012	-	-	-
87.3	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669768075	-	-	-
82.3	99.9	ArrayExpress	E-ATMX-13-raw-cel-1556149935	-	-	-
79.2	99.9	ArrayExpress	E-ATMX-31-raw-cel-1516947882	-	-	-
76.9	99.9	ArrayExpress	E-MEXP-1797-raw-cel-1669768084	-	-	-
62.8	99.8	ArrayExpress	E-MEXP-1797-raw-cel-1669768021	-	-	-
61.8	99.8	ArrayExpress	E-ATMX-31-raw-cel-1516947899	-	-	-
47.7	99.8	GSM184533	Protoplasted root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
42.5	99.8	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
42.2	99.8	GSM184559	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
39.3	99.8	ArrayExpress	E-MEXP-1797-raw-cel-1669767967	-	-	-
37.5	99.7	ArrayExpress	E-ATMX-13-raw-cel-1556149823	-	-	-
36.0	99.7	GSM133719	Deeken_A-1-Deeke-Tum_SLD_REP1	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
32.7	99.7	ArrayExpress	E-ATMX-13-raw-cel-1556149839	-	-	-
31.3	99.7	ArrayExpress	E-MEXP-1797-raw-cel-1669768039	-	-	-
30.6	99.7	ArrayExpress	E-ATMX-13-raw-cel-1556149855	-	-	-
30.5	99.7	GSM133951	Murray_2-7_T12-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
29.1	99.7	GSM133950	Murray_2-6_T10-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
28.1	99.7	ArrayExpress	E-ATMX-13-raw-cel-1556149919	-	-	-
25.6	99.7	GSM134204	Murray_3-2_D3-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
25.2	99.6	ArrayExpress	E-ATMX-13-raw-cel-1556149727	-	-	-
25.0	99.6	ArrayExpress	E-ATMX-13-raw-cel-1556149775	-	-	-
24.5	99.6	ArrayExpress	E-ATMX-31-raw-cel-1516947916	-	-	-
23.5	99.6	ArrayExpress	E-ATMX-13-raw-cel-1556149903	-	-	-
22.6	99.6	GSM133952	Murray_2-8_T14-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
22.2	99.6	ArrayExpress	E-ATMX-13-raw-cel-1556149871	-	-	-
22.1	99.6	GSM133953	Murray_2-9_T16-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
18.3	99.5	GSM133721	Deeken_A-1-Deeke-Tum_SLD_REP2	GSE5725	Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
18.0	99.5	GSM134202	Murray_3-1_D1-GROWTH_Rep1_ATH1	GSE5750	Growth of suspension-cultured cells
16.4	99.5	GSM133949	Murray_2-5_T8-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
15.2	99.4	ArrayExpress	E-ATMX-13-raw-cel-1556149743	-	-	-
15.1	99.4	GSM133948	Murray_2-4_T6-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
14.7	99.4	ArrayExpress	E-ATMX-13-raw-cel-1556149807	-	-	-
14.5	99.4	GSM131381	AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
14.4	99.4	GSM131417	AtGen_6-8124_Woundingstress-Roots-0.5h_Rep1	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
13.8	99.4	ArrayExpress	E-ATMX-13-raw-cel-1556149887	-	-	-
13.2	99.4	GSM131469	AtGen_6-9621_Heatstress(3h)+21hrecovery-Roots-24.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
13.1	99.4	ArrayExpress	E-ATMX-13-raw-cel-1556149791	-	-	-
13.0	99.4	GSM131233	AtGen_6-0121_Control-Roots-0.5h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
12.6	99.3	GSM131386	AtGen_6-7722_UV-Bstress-Roots-0.25h_Rep2	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
11.8	99.3	GSM131269	AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
11.8	99.3	GSM131422	AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
11.0	99.2	GSM184538	Whole roots 2hr KCl control treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	GSM131385	AtGen_6-7721_UV-Bstress-Roots-0.25h_Rep1	GSE5626	AtGenExpress: Stress Treatments (UV-B stress)
10.5	99.2	GSM131266	AtGen_6-1222_Cold(4°C)-Roots-1.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
10.3	99.2	GSM131466	AtGen_6-9522_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
10.2	99.2	GSM131241	AtGen_6-0321_Control-Roots-3.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
10.2	99.2	GSM9605	iaa17-6_+IAA_1	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
9.6	99.1	ArrayExpress	E-MEXP-1797-raw-cel-1669768030	-	-	-
9.6	99.1	GSM131465	AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
9.0	99.1	GSM9612	axr3-1_+IAA_2	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
8.9	99.0	ArrayExpress	E-MEXP-1797-raw-cel-1669767940	-	-	-

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Gene ID	At2g19990
Gene name	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)
Functional description	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.