CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At2g15820

Gene name OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)

Functional description Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.0 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.1 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.8 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.7 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.6 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.6 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.6 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.2 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.1 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.0 99.6 ArrayExpress E-ATMX-6-raw-cel-1308219081 - - -
23.3 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.5 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.3 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1 99.5 GSM157392 Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
15.0 99.4 GSM157393 Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
14.9 99.4 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.8 99.4 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
14.5 99.4 GSM157389 Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
14.2 99.4 GSM157391 Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
13.9 99.4 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
13.7 99.4 GSM157390 Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
13.3 99.4 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8 99.3 GSM157388 Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
11.8 99.3 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8 99.3 GSM131460 AtGen_6-9412_Heatstress(3h)+3hrecovery-Shoots-6.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
11.5 99.3 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
11.4 99.3 GSM131459 AtGen_6-9411_Heatstress(3h)+3hrecovery-Shoots-6.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
11.1 99.2 GSM131323 AtGen_6-3511_Saltstress-Shoots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
10.8 99.2 ArrayExpress E-ATMX-35-raw-cel-1574334912 - - -
10.5 99.2 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.8 99.1 ArrayExpress E-MEXP-711-raw-cel-1563002537 - - -
9.3 99.1 ArrayExpress E-ATMX-6-raw-cel-1308219150 - - -
9.2 99.1 ArrayExpress E-ATMX-35-raw-cel-1574334896 - - -
9.1 99.1 GSM237294 Shoot Selenate rep1 GSE9311 Gene expression in roots and shoots of plants grown on selenate
9.0 99.1 GSM131463 AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
8.8 99.0 GSM131473 ATGE_7_C2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
8.8 99.0 GSM265846 control shortA GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.0	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.1	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.8	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.7	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.6	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.6	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.4	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.6	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.2	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.1	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.0	99.6	ArrayExpress	E-ATMX-6-raw-cel-1308219081	-	-	-
23.3	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.5	99.5	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
16.3	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1	99.5	GSM157392	Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
15.0	99.4	GSM157393	Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
14.9	99.4	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.8	99.4	GSM134370	St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
14.5	99.4	GSM157389	Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
14.2	99.4	GSM157391	Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
13.9	99.4	GSM131471	ATGE_7_A2	GSE5629	AtGenExpress: Developmental series (seedlings and whole plants)
13.7	99.4	GSM157390	Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
13.3	99.4	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8	99.3	GSM157388	Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1	GSE6832	Cytokinin treatment on aerial parts of seedlings
11.8	99.3	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.8	99.3	GSM131460	AtGen_6-9412_Heatstress(3h)+3hrecovery-Shoots-6.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
11.5	99.3	GSM131472	ATGE_7_B2	GSE5629	AtGenExpress: Developmental series (seedlings and whole plants)
11.4	99.3	GSM131459	AtGen_6-9411_Heatstress(3h)+3hrecovery-Shoots-6.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
11.1	99.2	GSM131323	AtGen_6-3511_Saltstress-Shoots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
10.8	99.2	ArrayExpress	E-ATMX-35-raw-cel-1574334912	-	-	-
10.5	99.2	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.8	99.1	ArrayExpress	E-MEXP-711-raw-cel-1563002537	-	-	-
9.3	99.1	ArrayExpress	E-ATMX-6-raw-cel-1308219150	-	-	-
9.2	99.1	ArrayExpress	E-ATMX-35-raw-cel-1574334896	-	-	-
9.1	99.1	GSM237294	Shoot Selenate rep1	GSE9311	Gene expression in roots and shoots of plants grown on selenate
9.0	99.1	GSM131463	AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
8.8	99.0	GSM131473	ATGE_7_C2	GSE5629	AtGenExpress: Developmental series (seedlings and whole plants)
8.8	99.0	GSM265846	control shortA	GSE10522	Expression data of Arabidopsis thaliana rosettes during chilling

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Gene ID	At2g15820
Gene name	OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)
Functional description	Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.