Specifically-expressed experiments

Gene ID At1g65060
Gene name 4CL3
Functional description encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
102.599.9ArrayExpressE-MEXP-449-raw-cel-676423253---
58.999.8GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
57.199.8GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
56.399.8GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
52.999.8GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
47.099.8GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
45.599.8GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
44.599.8GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
38.299.8GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
35.599.7ArrayExpressE-MEXP-449-raw-cel-676423133---
32.199.7ArrayExpressE-MEXP-449-raw-cel-676423036---
31.699.7GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
29.799.7ArrayExpressE-TABM-21-raw-cel-529816608---
29.099.7ArrayExpressE-MEXP-557-raw-cel-879731583---
28.499.7ArrayExpressE-TABM-21-raw-cel-529816648---
26.599.7ArrayExpressE-MEXP-849-raw-cel-1181980902---
24.399.6ArrayExpressE-MEXP-849-raw-cel-1181980966---
24.299.6ArrayExpressE-TABM-21-raw-cel-529816001---
24.299.6GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
23.999.6ArrayExpressE-TABM-21-raw-cel-529816362---
23.899.6ArrayExpressE-TABM-21-raw-cel-529816526---
23.099.6ArrayExpressE-MEXP-557-raw-cel-879731574---
22.899.6ArrayExpressE-TABM-21-raw-cel-529815951---
22.099.6GSM131630ATGE_58_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
22.099.6ArrayExpressE-MEXP-1344-raw-cel-1559561713---
21.899.6ArrayExpressE-MEXP-849-raw-cel-1181980950---
21.799.6ArrayExpressE-TABM-21-raw-cel-529816282---
20.799.6GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
20.699.6ArrayExpressE-MEXP-849-raw-cel-1181980894---
20.499.6GSM131631ATGE_58_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
19.599.6ArrayExpressE-MEXP-1451-raw-cel-1585200170---
19.399.6ArrayExpressE-MEXP-1344-raw-cel-1559561683---
19.399.6ArrayExpressE-MEXP-849-raw-cel-1181980942---
18.799.5ArrayExpressE-TABM-21-raw-cel-529816443---
18.599.5GSM339546Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -8GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
17.299.5GSM131632ATGE_58_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.999.5ArrayExpressE-MEXP-449-raw-cel-676423362---
16.699.5ArrayExpressE-MEXP-185-raw-cel-358912054---
16.499.5GSM133122S0_12H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
16.499.5ArrayExpressE-TABM-21-raw-cel-529816201---
16.199.5ArrayExpressE-MEXP-849-raw-cel-1181980910---
15.799.5GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.399.4GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
15.199.4GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.399.4GSM232889Wt.3-1.0GSE9201Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5Link to GEO
14.099.4ArrayExpressE-MEXP-1443-raw-cel-1581869573---
14.099.4GSM131754Quick_A22_1-96hr_Rep1_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
13.899.4ArrayExpressE-MEXP-550-raw-cel-871342499---
13.899.4GSM187241Col-O_BL_CGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
13.799.4GSM131780Quick_A23_2-96hr_Rep1_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
13.399.4ArrayExpressE-MEXP-849-raw-cel-1181980934---
13.199.4GSM131579ATGE_32_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.999.3GSM131582ATGE_33_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.899.3GSM128732Hennig_1-4_flower-buds-CK_021114_1_B_Rep2_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in ArabidopsisLink to GEO
12.799.3GSM131772Quick_A100_1-96hr_Rep4_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
12.599.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.299.3ArrayExpressE-MEXP-1112-raw-cel-1590665585---
11.999.3GSM131398AtGen_6-7322_UV-Bstress-Roots-3.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
11.899.3ArrayExpressE-MEXP-550-raw-cel-871342382---
11.899.3GSM131797Quick_A97_2-48hr_Rep4_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
11.899.3ArrayExpressE-MEXP-849-raw-cel-1181980886---
11.699.3GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)Link to GEO
11.699.3GSM187240Col-O_BL_BGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
11.599.3ArrayExpressE-TABM-63-raw-cel-681137230---
11.499.3GSM131833Quick_A53_0-0hr_Rep3_ATH1GSE5639Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)Link to GEO
11.499.3ArrayExpressE-MEXP-550-raw-cel-871342391---
11.399.3GSM131616ATGE_53_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.399.3GSM131397AtGen_6-7321_UV-Bstress-Roots-3.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
11.299.2GSM131786Quick_A49_2-96hr_Rep2_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
11.099.2GSM131784Quick_A41_2-24hr_Rep2_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
11.099.2GSM131580ATGE_32_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.999.2GSM131583ATGE_33_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.799.2GSM131831Quick_A27_0-0hr_Rep2_ATH1GSE5639Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)Link to GEO
10.699.2ArrayExpressE-MEXP-1592-raw-cel-1617526984---
10.599.2GSM187239Col-O_BL_AGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
10.499.2GSM187243Col_HL_BGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
10.399.2GSM131615ATGE_53_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.399.2ArrayExpressE-MEXP-1112-raw-cel-1590666001---
10.399.2ArrayExpressE-MEXP-185-raw-cel-358911830---
10.299.2ArrayExpressE-MEXP-849-raw-cel-1181980926---
10.199.2GSM131617ATGE_53_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.199.2GSM131785Quick_A45_2-48hr_Rep2_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
10.199.2GSM131581ATGE_32_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.199.2GSM131826Quick_A102_3-96hr_Rep4_ATH1GSE5638Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)Link to GEO
10.099.2GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
10.099.2GSM131792Quick_A75_2-96hr_Rep3_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
10.099.2GSM131584ATGE_33_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.099.2GSM131472ATGE_7_B2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)Link to GEO
9.999.1ArrayExpressE-TABM-63-raw-cel-681137264---
9.999.1GSM131791Quick_A71_2-48hr_Rep3_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
9.899.1GSM131825Quick_A98_3-48hr_Rep4_ATH1GSE5638Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)Link to GEO
9.799.1GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
9.799.1GSM131796Quick_A93_2-24hr_Rep4_ATH1GSE5637Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)Link to GEO
9.799.1ArrayExpressE-MEXP-1112-raw-cel-1590665637---
9.599.1GSM184504Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.299.1ArrayExpressE-MEXP-1443-raw-cel-1581869515---
9.299.1GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.199.1GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
9.199.1ArrayExpressE-MEXP-1304-raw-cel-1530618724---
9.199.1GSM131158AtGen_C-8_2-C-24_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestansLink to GEO
9.099.1GSM131770Quick_A92_1-24hr_Rep4_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
8.999.0ArrayExpressE-MEXP-449-raw-cel-676422999---
8.999.0GSM131808Quick_A24_3-96hr_Rep1_ATH1GSE5638Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)Link to GEO
8.999.0GSM131766Quick_A74_1-96hr_Rep3_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)Link to GEO
8.899.0GSM142805SS001_ATH1_A8-Smith-11GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
8.899.0ArrayExpressE-MEXP-185-raw-cel-358911942---
8.899.0GSM131834Quick_A78_5-0hr_Rep3_ATH1GSE5639Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)Link to GEO
8.899.0ArrayExpressE-MEXP-185-raw-cel-358912110---
8.799.0ArrayExpressE-MEXP-1451-raw-cel-1585200234---
8.799.0GSM131622ATGE_55_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.799.0GSM131618ATGE_54_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
8.699.0GSM131623ATGE_55_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO



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