Specifically-expressed experiments

Gene ID At1g64780
Gene name ATAMT1
Functional description encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.899.8ArrayExpressE-MEXP-635-raw-cel-912819824---
56.899.8GSM133825Walters_A-04-Kruger-WH1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
54.999.8GSM133826Walters_A-05-Kruger-WH2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
51.099.8ArrayExpressE-MEXP-635-raw-cel-912819840---
50.099.8GSM133827Walters_A-06-Kruger-WH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
44.099.8GSM133823Walters_A-02-Kruger-WL2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
42.499.8GSM133822Walters_A-01-Kruger-WL1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
38.899.8GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
36.199.7ArrayExpressEvans_2-2_col-WT-cold_ATH1---
35.399.7GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
34.399.7GSM133824Walters_A-03-Kruger-WL3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
33.199.7GSM237295Shoot Selenate rep2GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
31.399.7GSM237294Shoot Selenate rep1GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
31.199.7ArrayExpressEvans_2-8_35s-FAD3-cold_ATH1---
28.699.7ArrayExpressEvans_2-4_fab1-mut-cold_ATH1---
26.799.7ArrayExpressEvans_2-10_col-aeq-cold_ATH1---
24.799.6GSM133833Walters_A-12-Kruger-MH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
23.999.6GSM297387At.StarchSD.WTSS3.SS3R2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
23.599.6ArrayExpressEvans_2-6_fab2-mut-cold_ATH1---
23.299.6GSM142755MJ001_ATH1_A6-jones-RH-Rep3GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
22.999.6ArrayExpressE-ATMX-19-raw-cel-1375547394---
22.099.6GSM133399Knight_2-1_wildtype-lt_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
22.099.6GSM75515Col-0 6h MOCK replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
21.599.6ArrayExpressE-MEXP-185-raw-cel-358912054---
21.299.6GSM133832Walters_A-11-Kruger-MH2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
21.199.6ArrayExpressEvans_2-1_col-WT-ambient_ATH1---
20.899.6GSM133831Walters_A-10-Kruger-MH1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
20.699.6GSM75511Col-0 6h MOCK replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
20.599.6GSM128718Pieterse_1-4_Control-72h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
19.999.6GSM142805SS001_ATH1_A8-Smith-11GSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
19.599.6GSM133401Knight_2-2_wildtype-dk_Rep1_ATH1GSE5710Dark-induced gene expression in sfr6Link to GEO
18.699.5GSM291023root - 08% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
18.499.5GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
17.799.5GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
17.699.5ArrayExpressEvans_2-12_fab3-7-8-mut-aeq-cold_ATH1---
17.599.5ArrayExpressE-MEXP-637-raw-cel-913039171---
17.599.5GSM157323Hammond_3-16_Control-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
16.799.5GSM184560Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.599.5GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
16.299.5ArrayExpressE-MEXP-185-raw-cel-358911942---
15.999.5ArrayExpressE-MEXP-449-raw-cel-676423067---
15.899.5ArrayExpressE-MEXP-443-raw-cel-669122963---
15.499.5GSM157326Hammond_3-10_Control-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
15.399.4ArrayExpressE-MEXP-185-raw-cel-358912110---
15.199.4GSM133830Walters_A-09-Kruger-ML3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
15.199.4GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
15.099.4GSM133828Walters_A-07-Kruger-ML1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
15.099.4GSM131414AtGen_6-8724_Woundingstress-Roots-0.25h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
14.999.4GSM157327Hammond_3-11_Potassium-starved-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
14.599.4GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
14.499.4ArrayExpressE-MEXP-185-raw-cel-358911830---
14.399.4GSM131217Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1GSE5618Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTALink to GEO
14.399.4GSM133829Walters_A-08-Kruger-ML2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutantLink to GEO
14.399.4ArrayExpressE-MEXP-1299-raw-cel-1519902558---
14.099.4GSM131270AtGen_6-1322_Cold(4°C)-Roots-3.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
14.099.4ArrayExpressE-MEXP-185-raw-cel-358911606---
13.999.4GSM131568ATGE_95_BGSE5631AtGenExpress: Developmental series (roots)Link to GEO
13.799.4ArrayExpressE-MEXP-185-raw-cel-358911718---
13.699.4ArrayExpressE-MEXP-185-raw-cel-358911998---
13.599.4GSM237293Shoot control rep2GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
13.499.4GSM157328Hammond_3-12_Caesium-treated-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
13.499.4ArrayExpressE-MEXP-443-raw-cel-669122954---
13.099.4GSM142753MJ001_ATH1_A4-jones-rh2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
13.099.4GSM131382AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
12.999.3GSM187253hy5_HL_AGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
12.999.3ArrayExpressE-MEXP-637-raw-cel-913039196---
12.999.3GSM291114root - 21% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
12.799.3GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
12.699.3GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
12.699.3GSM133126S0_2H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
12.599.3GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
12.599.3GSM131410AtGen_6-7622_UV-Bstress-Roots-24.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
12.499.3GSM131265AtGen_6-1221_Cold(4°C)-Roots-1.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
12.499.3GSM131413AtGen_6-8723_Woundingstress-Roots-0.25h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
12.499.3GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
12.299.3GSM131569ATGE_95_CGSE5631AtGenExpress: Developmental series (roots)Link to GEO
12.099.3GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
12.099.3GSM131219Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1GSE5618Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTALink to GEO
11.999.3GSM187254hy5_HL_BGSE7743Genome-wide gene expression analysis reveals a critical role for CRY1 in the Response of Arabidopsis to High IrradianceLink to GEO
11.899.3GSM231200chl1 at T0, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
11.699.3GSM142816SS002_ATH1_A8-smith-14hGSE6174Gene expression and carbohydrate metabolism through the diurnal cycleLink to GEO
11.699.3GSM157325Hammond_3-18_Caesium-treated-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
11.699.3GSM131418AtGen_6-8126_Woundingstress-Roots-0.5h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
11.699.3GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
11.699.3GSM133138S1500_2H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
11.599.3GSM157316Hammond_3-6_Caesium-treated-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plantsLink to GEO
11.599.3ArrayExpressE-MEXP-1304-raw-cel-1530618724---
11.599.3GSM133136S1500_24H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
11.599.3GSM231194wild-type at T0, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5hLink to GEO
11.499.3GSM218593Whole roots 3.5hr KCl control treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.399.3GSM157307Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
11.399.3ArrayExpressE-MEXP-1344-raw-cel-1559561683---
10.999.2GSM131238AtGen_6-0222_Control-Roots-1.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.999.2GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.899.2GSM297397At.StarchSD.WTSS3.WTR2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycleLink to GEO
10.899.2GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in ArabidopsisLink to GEO
10.799.2ArrayExpressE-MEXP-1262-raw-cel-1502675964---
10.799.2GSM131442AtGen_6-9722_Heatstress-Roots-0.25h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
10.799.2ArrayExpressE-ATMX-19-raw-cel-1375547411---
10.799.2GSM131226AtGen_6-0022_Control-Roots-0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.799.2GSM131564ATGE_94_AGSE5631AtGenExpress: Developmental series (roots)Link to GEO
10.699.2GSM131257AtGen_6-0621_Control-Roots-24.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.599.2GSM133124S0_24H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.599.2GSM131258AtGen_6-0622_Control-Roots-24.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.599.2GSM133140S1500_4H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.499.2GSM131433AtGen_6-8524_Woundingstress-Roots-12.0h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
10.399.2ArrayExpressE-MEXP-791-raw-cel-1122937605---
10.399.2GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2GSM133135S1500_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.299.2GSM133123S0_24H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.299.2GSM131261AtGen_6-1121_Cold(4°C)-Roots-0.5h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
10.299.2GSM260882Yap_A1-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathwaysLink to GEO
10.199.2GSM133122S0_12H_BGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
10.099.2GSM131567ATGE_95_AGSE5631AtGenExpress: Developmental series (roots)Link to GEO
10.099.2GSM131234AtGen_6-0122_Control-Roots-0.5h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
9.999.1GSM237292Shoot control rep1GSE9311Gene expression in roots and shoots of plants grown on selenateLink to GEO
9.799.1ArrayExpressE-MEXP-1262-raw-cel-1502675687---
9.799.1GSM131385AtGen_6-7721_UV-Bstress-Roots-0.25h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
9.699.1GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.699.1GSM131438AtGen_6-8622_Woundingstress-Roots-24.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
9.599.1GSM131381AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
9.599.1ArrayExpressEvans_2-7_35s-FAD3-ambient_ATH1---
9.499.1GSM131566ATGE_94_CGSE5631AtGenExpress: Developmental series (roots)Link to GEO
9.299.1GSM142869GW001_ATH1_A14-Warre-3caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
9.299.1GSM265413Arabidopsis, whole roots, -Fe, replicate 3GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)Link to GEO
9.299.1GSM142896MW001_ATH1_A3-Wheel-w05GSE6179An investigation into transcriptional changes in developing Arabidopsis leaf caused by novel signalling protein, SPH1.Link to GEO
9.199.1GSM131565ATGE_94_BGSE5631AtGenExpress: Developmental series (roots)Link to GEO
9.199.1ArrayExpressE-MEXP-443-raw-cel-669122918---
9.099.1GSM131256AtGen_6-0612_Control-Shoots-24.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
9.099.1GSM133127S0_4H_AGSE5688AtGenExpress: Response to sulfate limitationLink to GEO
9.099.1GSM157310Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
9.099.1GSM157309Gan_1-5_wildtype-nitrate-continuous(WNC)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architectureLink to GEO
9.099.1ArrayExpressE-MEXP-449-raw-cel-676422954---
8.999.0GSM244457Arabidopsis wild-type_90-105 min_ Xanthomonas inoculated_biological rep2_exp4GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
8.899.0GSM131386AtGen_6-7722_UV-Bstress-Roots-0.25h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
8.899.0GSM131358AtGen_6-4622_Droughtstress-Roots-24.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
8.899.0ArrayExpressE-MEXP-828-raw-cel-1156922509---
8.799.0GSM142752MJ001_ATH1_A3-jones-rh1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.Link to GEO
8.799.0ArrayExpressE-MEXP-1304-raw-cel-1530619513---
8.799.0GSM131225AtGen_6-0021_Control-Roots-0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
8.799.0GSM244459Arabidopsis AtMYB30-as_90-105 min_ Xanthomonas inoculated_biological rep2_exp4GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
8.799.0GSM260879A2-Greco-WTGSE10322Higher order transcriptional regulation conferred by the bountiful gain of function mutantLink to GEO
8.699.0ArrayExpressE-MEXP-1304-raw-cel-1530618924---



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