CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At1g64280

Gene name NPR1 (NONEXPRESSER OF PR GENES 1)

Functional description This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.5 99.7 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
31.3 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.6 99.5 ArrayExpress E-NASC-76-raw-cel-1359878951 - - -
18.3 99.5 ArrayExpress E-NASC-76-raw-cel-1359879106 - - -
16.7 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.6 99.5 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
13.0 99.4 GSM134385 St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
12.6 99.3 ArrayExpress E-NASC-76-raw-cel-1359879132 - - -
12.3 99.3 GSM134386 St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
11.8 99.3 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.0 99.2 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
11.0 99.2 GSM134369 St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
10.8 99.2 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
10.6 99.2 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
10.6 99.2 GSM134387 St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
10.6 99.2 GSM128660 Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.3 99.2 ArrayExpress E-MEXP-174-raw-cel-357966600 - - -
10.2 99.2 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.2 99.2 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.9 99.1 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
9.9 99.1 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.8 99.1 GSM134458 St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
9.6 99.1 GSM142844 MG001_ATH1_A25-Torres-8N1 GSE6176 Impact of Type III effectors on plant defense responses
9.3 99.1 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.7 99.0 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.5	99.7	GSM128662	Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
31.3	99.7	GSM128661	Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.6	99.5	ArrayExpress	E-NASC-76-raw-cel-1359878951	-	-	-
18.3	99.5	ArrayExpress	E-NASC-76-raw-cel-1359879106	-	-	-
16.7	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.6	99.5	GSM128676	Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
13.0	99.4	GSM134385	St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
12.6	99.3	ArrayExpress	E-NASC-76-raw-cel-1359879132	-	-	-
12.3	99.3	GSM134386	St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
11.8	99.3	GSM128677	Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.0	99.2	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
11.0	99.2	GSM134369	St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5753	Expression Level Polymorphism Project (ELP) - Cvi-1
10.8	99.2	GSM142846	MG001_ATH1_A27-Torres-9N1	GSE6176	Impact of Type III effectors on plant defense responses
10.6	99.2	GSM134459	St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
10.6	99.2	GSM134387	St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
10.6	99.2	GSM128660	Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.3	99.2	ArrayExpress	E-MEXP-174-raw-cel-357966600	-	-	-
10.2	99.2	GSM244455	Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
10.2	99.2	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.9	99.1	GSM142904	WW002_ATH1_A1-willa-CON-REP2	GSE6181	Assembly of the cell wall pectic matrix.
9.9	99.1	GSM128683	Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.8	99.1	GSM134458	St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5758	Expression Level Polymorphism Project (ELP) - Mt-0
9.6	99.1	GSM142844	MG001_ATH1_A25-Torres-8N1	GSE6176	Impact of Type III effectors on plant defense responses
9.3	99.1	GSM128654	Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.7	99.0	GSM142649	MC002_ATH1_A9.3-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

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Gene ID	At1g64280
Gene name	NPR1 (NONEXPRESSER OF PR GENES 1)
Functional description	This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.