Specifically-expressed experiments

Gene ID At1g59500
Gene name GH3.4
Functional description encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
213.4100.0GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
204.1100.0GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
184.0100.0GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
183.4100.0GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
177.5100.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
164.399.9GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
155.399.9GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
128.599.9ArrayExpressE-MEXP-715-raw-cel-1121836361---
123.799.9GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
122.299.9ArrayExpressE-MEXP-715-raw-cel-1121836247---
118.499.9ArrayExpressE-MEXP-715-raw-cel-1121836334---
79.799.9ArrayExpressE-MEXP-715-raw-cel-1121836221---
75.199.9GSM179974Arabidopsis roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
71.999.9ArrayExpressE-MEXP-715-raw-cel-1121836113---
62.399.8GSM179973Arabidopsis roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
54.599.8GSM179978Arabidopsis ein2 mutant roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
54.099.8GSM179977Arabidopsis ein2 mutant roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
54.099.8GSM25863IAA Treated - 2GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
53.699.8GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
50.099.8GSM9587arf19-1_+IAA_2GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
49.399.8GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
49.199.8GSM25862IAA treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
47.499.8GSM9618i5i6i19_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
46.899.8GSM9588arf19-1_+IAA_3GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
46.499.8GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
45.999.8GSM9606iaa17-6_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
43.499.8GSM9586arf19-1_+IAA_1GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
42.599.8GSM9634arf2-6_+IAA_3GSE630Auxin-mediated gene expressionLink to GEO
41.099.8GSM9619i5i6i19_+IAA_3GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
40.799.8GSM9574Col_+IAA_1GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
40.199.8GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
40.099.8GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
38.399.8GSM25877IAA/B Treated - 2GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
37.799.7GSM131294AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
36.899.7ArrayExpressE-MEXP-1256-raw-cel-1502196322---
33.599.7ArrayExpressE-MEXP-715-raw-cel-1121836087---
33.299.7GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
32.999.7GSM131277AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
31.799.7GSM131310AtGen_6-3122_Saltstress-Roots-0.5h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
30.999.7GSM131293AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
30.699.7GSM179969Arabidopsis aux1 mutant roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
30.499.7GSM131314AtGen_6-3222_Saltstress-Roots-1.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
29.799.7GSM131313AtGen_6-3221_Saltstress-Roots-1.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
29.099.7GSM9632arf2-6_+IAA_2GSE630Auxin-mediated gene expressionLink to GEO
28.999.7GSM131278AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
28.899.7GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
27.399.7GSM9630arf2-6_+IAA_1GSE630Auxin-mediated gene expressionLink to GEO
26.499.7GSM9605iaa17-6_+IAA_1GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
25.799.7ArrayExpressE-MEXP-1256-raw-cel-1502196386---
24.399.6GSM25864IAA Treated - 3GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
24.299.6GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
23.999.6GSM131273AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
23.199.6GSM131298AtGen_6-2422_Osmoticstress-Roots-6.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
23.199.6GSM9612axr3-1_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
22.199.6GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
21.499.6GSM131454AtGen_6-9322_Heatstress-Roots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
21.199.6GSM25865IAA Treated - 4GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
20.599.6ArrayExpressE-MEXP-1256-raw-cel-1502196354---
20.399.6GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
19.499.6GSM131453AtGen_6-9321_Heatstress-Roots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
18.699.5ArrayExpressE-MEXP-715-raw-cel-1121835979---
18.699.5GSM131274AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
17.799.5GSM9607iaa17-6_+IAA_3GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
17.599.5GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
17.499.5GSM179970Arabidopsis aux1 mutant roots, ethylene treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
17.499.5GSM25878IAA/B Treated - 3GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
16.499.5ArrayExpressE-MEXP-715-raw-cel-1121836005---
16.499.5GSM131370AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
16.199.5GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
15.199.4GSM179963Arabidopsis aux1 mutant roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
14.799.4GSM9599Col_+IAA_I_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
14.799.4GSM131373AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
14.599.4GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.199.4GSM9628Col_+IAA_A2_3GSE630Auxin-mediated gene expressionLink to GEO
13.799.4GSM290753root - 01% oxygen - 2h - EGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
13.099.4GSM179960Arabidopsis roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
12.299.3GSM131377AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
12.299.3GSM179958Arabidopsis roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
12.299.3GSM131309AtGen_6-3121_Saltstress-Roots-0.5h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
12.299.3GSM131297AtGen_6-2421_Osmoticstress-Roots-6.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
11.999.3GSM131430AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
11.899.3ArrayExpressE-MEXP-1797-raw-cel-1669768057---
11.899.3GSM131369AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
11.799.3GSM131241AtGen_6-0321_Control-Roots-3.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
11.699.3ArrayExpressE-MEXP-635-raw-cel-912819872---
11.599.3GSM131249AtGen_6-0421_Control-Roots-6.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
11.599.3GSM9617i5i6i19_+IAA_1GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
11.499.3GSM131290AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO
11.299.2GSM131345AtGen_6-4321_Droughtstress-Roots-3.0h_Rep1GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
11.299.2GSM131450AtGen_6-9222_Heatstress-Roots-1.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
11.199.2GSM218595Whole roots 3.5hr KNO3 treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM131346AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)Link to GEO
10.899.2GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.699.2GSM131245AtGen_6-0821_Control-Roots-4.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO
10.499.2GSM179961Arabidopsis roots, ethylene treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
10.099.2ArrayExpressE-MEXP-637-raw-cel-913039258---
9.999.1ArrayExpressE-MEXP-635-raw-cel-912819856---
9.799.1GSM25873IAA/A Treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
9.799.1GSM131449AtGen_6-9221_Heatstress-Roots-1.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
9.799.1GSM131422AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
9.599.1GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
9.499.1GSM131269AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
9.499.1GSM131425AtGen_6-8324_Woundingstress-Roots-3.0h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
9.299.1GSM131426AtGen_6-8325_Woundingstress-Roots-3.0h_Rep2GSE5627AtGenExpress: Stress Treatments (Wounding stress)Link to GEO
9.199.1GSM131378AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)Link to GEO
9.099.1GSM179972Arabidopsis roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
9.099.1GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
9.099.1GSM291023root - 08% oxygen - 30min - GGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
8.999.0GSM25876IAA/B Treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
8.899.0GSM131242AtGen_6-0322_Control-Roots-3.0h_Rep2GSE5620AtGenExpress: Stress Treatments (Control plants)Link to GEO



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