Specifically-expressed experiments

Gene ID	At1g59500
Gene name	GH3.4
Functional description	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
213.4	100.0	GSM75514	Col-0 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
204.1	100.0	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
184.0	100.0	GSM75510	Col-0 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
183.4	100.0	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
177.5	100.0	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
164.3	99.9	GSM75509	Col-0 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
155.3	99.9	GSM75513	Col-0 2h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
128.5	99.9	ArrayExpress	E-MEXP-715-raw-cel-1121836361	-	-	-
123.7	99.9	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
122.2	99.9	ArrayExpress	E-MEXP-715-raw-cel-1121836247	-	-	-
118.4	99.9	ArrayExpress	E-MEXP-715-raw-cel-1121836334	-	-	-
79.7	99.9	ArrayExpress	E-MEXP-715-raw-cel-1121836221	-	-	-
75.1	99.9	GSM179974	Arabidopsis roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
71.9	99.9	ArrayExpress	E-MEXP-715-raw-cel-1121836113	-	-	-
62.3	99.8	GSM179973	Arabidopsis roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
54.5	99.8	GSM179978	Arabidopsis ein2 mutant roots, IAA treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
54.0	99.8	GSM179977	Arabidopsis ein2 mutant roots, IAA treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
54.0	99.8	GSM25863	IAA Treated - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
53.6	99.8	GSM75518	slr-1 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
50.0	99.8	GSM9587	arf19-1_+IAA_2	GSE627	Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
49.3	99.8	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
49.1	99.8	GSM25862	IAA treated - 1	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
47.4	99.8	GSM9618	i5i6i19_+IAA_2	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
46.8	99.8	GSM9588	arf19-1_+IAA_3	GSE627	Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
46.4	99.8	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
45.9	99.8	GSM9606	iaa17-6_+IAA_2	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
43.4	99.8	GSM9586	arf19-1_+IAA_1	GSE627	Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
42.5	99.8	GSM9634	arf2-6_+IAA_3	GSE630	Auxin-mediated gene expression
41.0	99.8	GSM9619	i5i6i19_+IAA_3	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
40.7	99.8	GSM9574	Col_+IAA_1	GSE627	Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
40.1	99.8	GSM75517	slr-1 2h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
40.0	99.8	GSM75520	slr-1 2h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
38.3	99.8	GSM25877	IAA/B Treated - 2	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
37.7	99.7	GSM131294	AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
36.8	99.7	ArrayExpress	E-MEXP-1256-raw-cel-1502196322	-	-	-
33.5	99.7	ArrayExpress	E-MEXP-715-raw-cel-1121836087	-	-	-
33.2	99.7	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
32.9	99.7	GSM131277	AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
31.7	99.7	GSM131310	AtGen_6-3122_Saltstress-Roots-0.5h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
30.9	99.7	GSM131293	AtGen_6-2321_Osmoticstress-Roots-3.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
30.6	99.7	GSM179969	Arabidopsis aux1 mutant roots, ethylene treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
30.4	99.7	GSM131314	AtGen_6-3222_Saltstress-Roots-1.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
29.7	99.7	GSM131313	AtGen_6-3221_Saltstress-Roots-1.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
29.0	99.7	GSM9632	arf2-6_+IAA_2	GSE630	Auxin-mediated gene expression
28.9	99.7	GSM131278	AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
28.8	99.7	GSM131330	AtGen_6-3622_Saltstress-Roots-24.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
27.3	99.7	GSM9630	arf2-6_+IAA_1	GSE630	Auxin-mediated gene expression
26.4	99.7	GSM9605	iaa17-6_+IAA_1	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
25.7	99.7	ArrayExpress	E-MEXP-1256-raw-cel-1502196386	-	-	-
24.3	99.6	GSM25864	IAA Treated - 3	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
24.2	99.6	GSM142596	DB001_ATH1_A6-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
23.9	99.6	GSM131273	AtGen_6-1421_Cold(4°C)-Roots-6.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
23.1	99.6	GSM131298	AtGen_6-2422_Osmoticstress-Roots-6.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
23.1	99.6	GSM9612	axr3-1_+IAA_2	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
22.1	99.6	GSM131281	AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
21.4	99.6	GSM131454	AtGen_6-9322_Heatstress-Roots-3.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
21.1	99.6	GSM25865	IAA Treated - 4	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
20.5	99.6	ArrayExpress	E-MEXP-1256-raw-cel-1502196354	-	-	-
20.3	99.6	GSM131282	AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
19.4	99.6	GSM131453	AtGen_6-9321_Heatstress-Roots-3.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
18.6	99.5	ArrayExpress	E-MEXP-715-raw-cel-1121835979	-	-	-
18.6	99.5	GSM131274	AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
17.7	99.5	GSM9607	iaa17-6_+IAA_3	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
17.5	99.5	GSM142594	DB001_ATH1_A4-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
17.4	99.5	GSM179970	Arabidopsis aux1 mutant roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
17.4	99.5	GSM25878	IAA/B Treated - 3	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
16.4	99.5	ArrayExpress	E-MEXP-715-raw-cel-1121836005	-	-	-
16.4	99.5	GSM131370	AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
16.1	99.5	GSM142591	DB001_ATH1_A1-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
15.1	99.4	GSM179963	Arabidopsis aux1 mutant roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
14.7	99.4	GSM9599	Col_+IAA_I_2	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
14.7	99.4	GSM131373	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
14.5	99.4	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
14.1	99.4	GSM9628	Col_+IAA_A2_3	GSE630	Auxin-mediated gene expression
13.7	99.4	GSM290753	root - 01% oxygen - 2h - E	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
13.0	99.4	GSM179960	Arabidopsis roots, ethylene treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.2	99.3	GSM131377	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
12.2	99.3	GSM179958	Arabidopsis roots, air treatment, replica 1	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
12.2	99.3	GSM131309	AtGen_6-3121_Saltstress-Roots-0.5h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.2	99.3	GSM131297	AtGen_6-2421_Osmoticstress-Roots-6.0h_Rep1	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.9	99.3	GSM131430	AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
11.8	99.3	ArrayExpress	E-MEXP-1797-raw-cel-1669768057	-	-	-
11.8	99.3	GSM131369	AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
11.7	99.3	GSM131241	AtGen_6-0321_Control-Roots-3.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
11.6	99.3	ArrayExpress	E-MEXP-635-raw-cel-912819872	-	-	-
11.5	99.3	GSM131249	AtGen_6-0421_Control-Roots-6.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
11.5	99.3	GSM9617	i5i6i19_+IAA_1	GSE629	Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutants
11.4	99.3	GSM131290	AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2	GSE5622	AtGenExpress: Stress Treatments (Osmotic stress)
11.2	99.2	GSM131345	AtGen_6-4321_Droughtstress-Roots-3.0h_Rep1	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
11.2	99.2	GSM131450	AtGen_6-9222_Heatstress-Roots-1.0h_Rep2	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
11.1	99.2	GSM218595	Whole roots 3.5hr KNO3 treated then frozen, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM131346	AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2	GSE5624	AtGenExpress: Stress Treatments (Drought stress)
10.8	99.2	GSM184916	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.6	99.2	GSM131245	AtGen_6-0821_Control-Roots-4.0h_Rep1	GSE5620	AtGenExpress: Stress Treatments (Control plants)
10.4	99.2	GSM179961	Arabidopsis roots, ethylene treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
10.0	99.2	ArrayExpress	E-MEXP-637-raw-cel-913039258	-	-	-
9.9	99.1	ArrayExpress	E-MEXP-635-raw-cel-912819856	-	-	-
9.7	99.1	GSM25873	IAA/A Treated - 1	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
9.7	99.1	GSM131449	AtGen_6-9221_Heatstress-Roots-1.0h_Rep1	GSE5628	AtGenExpress: Stress Treatments (Heat stress)
9.7	99.1	GSM131422	AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
9.5	99.1	GSM142592	DB001_ATH1_A2-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
9.4	99.1	GSM131269	AtGen_6-1321_Cold(4°C)-Roots-3.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
9.4	99.1	GSM131425	AtGen_6-8324_Woundingstress-Roots-3.0h_Rep1	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
9.2	99.1	GSM131426	AtGen_6-8325_Woundingstress-Roots-3.0h_Rep2	GSE5627	AtGenExpress: Stress Treatments (Wounding stress)
9.1	99.1	GSM131378	AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2	GSE5625	AtGenExpress: Stress Treatments (Genotoxic stress)
9.0	99.1	GSM179972	Arabidopsis roots, mock treatment, replica 2	GSE7432	Ethylene and auxin interactions in the roots of Arabidopsis seedlings
9.0	99.1	GSM184917	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.0	99.1	GSM291023	root - 08% oxygen - 30min - G	GSE11558	transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
8.9	99.0	GSM25876	IAA/B Treated - 1	GSE1491	Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
8.8	99.0	GSM131242	AtGen_6-0322_Control-Roots-3.0h_Rep2	GSE5620	AtGenExpress: Stress Treatments (Control plants)

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