Specifically-expressed experiments

Gene ID At1g51660
Gene name ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)
Functional description Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.699.8ArrayExpressE-MEXP-546-raw-cel-863289404---
57.399.8ArrayExpressE-MEXP-546-raw-cel-863289450---
54.399.8ArrayExpressE-MEXP-546-raw-cel-863289586---
50.199.8GSM322555genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
41.599.8GSM134459St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
39.299.8GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
35.199.7GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
35.099.7GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
34.299.7ArrayExpressE-MEXP-546-raw-cel-863289424---
34.199.7GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
33.599.7GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
33.299.7GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
31.599.7ArrayExpressE-MEXP-546-raw-cel-863289506---
30.799.7GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
29.799.7GSM322556genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
29.599.7GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
28.699.7ArrayExpressE-MEXP-739-raw-cel-1099467321---
27.499.7GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
27.099.7GSM39203Col_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
26.399.7GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
26.399.7GSM264761Tween 0.1% 1hGSE10464Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)Link to GEO
25.199.6GSM39206Col_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
24.299.6GSM39204Col_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
22.799.6GSM244448Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
22.599.6GSM134405St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1Link to GEO
22.099.6GSM322554genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
22.099.6GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepointsLink to GEO
21.099.6GSM142648MC002_ATH1_A9.2-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
19.999.6GSM134403St.Clair_1-100_268b_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1Link to GEO
19.299.6ArrayExpressE-MEXP-739-raw-cel-1099467384---
19.199.6GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
18.499.5GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
18.299.5GSM134421St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0Link to GEO
18.199.5GSM1330372508GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
18.099.5GSM322549genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
17.899.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.499.5GSM264764paraquat 20mM 1hGSE10464Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)Link to GEO
17.299.5GSM134458St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
17.099.5GSM131146AtGen_B-32_3-4-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
17.099.5GSM131147AtGen_B-33_3-5-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
16.199.5ArrayExpressE-MEXP-739-raw-cel-1099467339---
15.899.5ArrayExpressE-MEXP-98-raw-cel-320188859---
15.899.5GSM142647MC002_ATH1_A9.1-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
15.399.4GSM134422St.Clair_1-119_378_Van-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0Link to GEO
15.199.4GSM131134AtGen_B-20_2-6-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
14.699.4GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
14.599.4GSM134369St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1Link to GEO
14.499.4ArrayExpressE-MEXP-739-raw-cel-1099467375---
14.399.4GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
14.199.4GSM275642flu_60minGSE10876Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastidsLink to GEO
14.099.4ArrayExpressE-MEXP-739-raw-cel-1099467276---
14.099.4GSM134351St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5752Expression Level Polymorphism Project (ELP) - Col-0Link to GEO
14.099.4ArrayExpressE-MEXP-739-raw-cel-1099467330---
13.999.4ArrayExpressE-MEXP-739-raw-cel-1099467393---
13.999.4ArrayExpressE-MEXP-546-raw-cel-863289532---
13.799.4GSM322550genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
13.799.4GSM322548genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial designLink to GEO
13.799.4GSM131132AtGen_B-18_2-4-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
13.299.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.299.4ArrayExpressE-MEXP-546-raw-cel-863289476---
13.199.4GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
13.099.4GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.999.3GSM1330462788GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
12.899.3GSM39209RRE2_C3GSE2169rre1 and rre2 mutantsLink to GEO
12.899.3GSM134423St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0Link to GEO
12.699.3GSM131133AtGen_B-19_2-5-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
12.499.3ArrayExpressE-MEXP-547-raw-cel-863346376---
12.399.3GSM131391AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
12.299.3GSM48125Col_CSC1GSE2538Chitin Oligomer ExperimentLink to GEO
11.899.3GSM131119AtGen_B-5_1-5-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
11.799.3GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
11.699.3GSM1330482790GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
11.699.3ArrayExpressE-MEXP-547-raw-cel-863346403---
11.599.3GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
11.599.3ArrayExpressE-MEXP-98-raw-cel-320189079---
11.399.3GSM134367St.Clair_1-28_339_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1Link to GEO
11.199.2GSM131148AtGen_B-34_3-6-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
11.199.2GSM134412St.Clair_1-109_347_Van-0_0.02%-silwet_Rep1_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0Link to GEO
11.099.2GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
10.999.2GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
10.899.2GSM134359St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1Link to GEO
10.799.2GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
10.799.2GSM264762Tween 0.1% 2hGSE10464Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)Link to GEO
10.699.2GSM48126Col_CSC2GSE2538Chitin Oligomer ExperimentLink to GEO
10.699.2ArrayExpressE-MEXP-739-raw-cel-1099467303---
10.699.2GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.699.2GSM1330642528GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
10.599.2GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.499.2GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.299.2GSM131392AtGen_6-7212_UV-Bstress-Shoots-1.0h_Rep2GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
10.199.2ArrayExpressE-NASC-76-raw-cel-1359879132---
10.199.2GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.999.1GSM134404St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1Link to GEO
9.999.1GSM134387St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5754Expression Level Polymorphism Project (ELP) - EstLink to GEO
9.999.1GSM134350St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5752Expression Level Polymorphism Project (ELP) - Col-0Link to GEO
9.899.1GSM39191RRE1_C1GSE2169rre1 and rre2 mutantsLink to GEO
9.799.1GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.799.1GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.799.1ArrayExpressE-MEXP-739-raw-cel-1099467249---
9.699.1ArrayExpressE-MEXP-739-raw-cel-1099467294---
9.699.1GSM264763Tween 0.1% 4hGSE10464Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)Link to GEO
9.699.1GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
9.599.1GSM1330502791GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.499.1GSM39210RRE2_C4GSE2169rre1 and rre2 mutantsLink to GEO
9.399.1GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1GSM206276Wild type, chitooctaose treatment, biological rep3GSE8319A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in ArabidopsisLink to GEO
9.399.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.199.1GSM39207RRE2_C1GSE2169rre1 and rre2 mutantsLink to GEO
9.199.1GSM134439St.Clair_1-64_270b_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5757Expression Level Polymorphism Project (ELP) - Kin-0Link to GEO
9.199.1GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
9.199.1GSM1330412525GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.099.1GSM1330542796GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injectionLink to GEO
9.099.1GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.099.1GSM131118AtGen_B-4_1-4-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
8.999.0ArrayExpressE-MEXP-1797-raw-cel-1669768048---
8.999.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.899.0GSM206275Wild type, chitooctaose treatment, biological rep2GSE8319A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in ArabidopsisLink to GEO
8.899.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.899.0ArrayExpressE-NASC-76-raw-cel-1359879028---
8.799.0GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attackLink to GEO
8.799.0GSM131395AtGen_6-7311_UV-Bstress-Shoots-3.0h_Rep1GSE5626AtGenExpress: Stress Treatments (UV-B stress)Link to GEO
8.799.0ArrayExpressE-MEXP-739-raw-cel-1099467312---



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