CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At1g44830

Gene name AP2 domain-containing transcription factor TINY, putative

Functional description encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
641.3 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
318.9 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
285.4 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
278.0 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
207.8 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
205.7 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
178.8 100.0 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
121.5 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
104.3 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
77.8 99.9 GSM128788 Somerville_1-11_stem-GH8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
48.3 99.8 GSM133989 Birnbaum_1-22_gl2-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
39.9 99.8 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
33.7 99.7 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
31.5 99.7 ArrayExpress E-MEXP-715-raw-cel-1121836247 - - -
27.7 99.7 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.1 99.7 GSM128786 Somerville_1-9_stem-GC8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
25.5 99.7 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.8 99.6 GSM142883 CW001_ATH1_A1.2-WestC-wsb GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
21.4 99.6 ArrayExpress E-MEXP-715-raw-cel-1121835979 - - -
20.5 99.6 ArrayExpress Millenaar_A2_ETH_Rep1_ATH1 - - -
20.2 99.6 ArrayExpress E-MEXP-715-raw-cel-1121836005 - - -
20.1 99.6 ArrayExpress E-MEXP-715-raw-cel-1121836113 - - -
19.5 99.6 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
18.1 99.5 ArrayExpress Millenaar_A5_ETH_Rep3_ATH1 - - -
17.8 99.5 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
16.9 99.5 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
15.9 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.6 99.5 ArrayExpress E-MEXP-715-raw-cel-1121836087 - - -
15.4 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.1 99.4 GSM133992 Birnbaum_1-25_J0571-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
15.0 99.4 ArrayExpress E-MEXP-715-raw-cel-1121836221 - - -
14.9 99.4 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
14.3 99.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.6 99.4 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
13.6 99.4 ArrayExpress E-MEXP-715-raw-cel-1121836361 - - -
13.3 99.4 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
13.2 99.4 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
13.1 99.4 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.9 99.3 GSM131559 ATGE_9_B GSE5631 AtGenExpress: Developmental series (roots)
11.6 99.3 GSM131558 ATGE_9_A GSE5631 AtGenExpress: Developmental series (roots)
11.6 99.3 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
11.6 99.3 GSM133991 Birnbaum_1-24_gl2-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
11.5 99.3 ArrayExpress E-MEXP-715-raw-cel-1121836334 - - -
11.2 99.2 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.1 99.2 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
11.0 99.2 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.0 99.2 GSM142882 CW001_ATH1_A1.1-WestC-wsu GSE6178 Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
11.0 99.2 ArrayExpress E-MEXP-1468-raw-cel-1591138985 - - -
11.0 99.2 ArrayExpress E-MEXP-1468-raw-cel-1591139018 - - -
10.9 99.2 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
10.8 99.2 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.6 99.2 GSM128783 Somerville_1-6_flower-GH5_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
10.5 99.2 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.4 99.2 ArrayExpress E-NASC-78-raw-cel-1463195219 - - -
10.4 99.2 GSM131560 ATGE_9_C GSE5631 AtGenExpress: Developmental series (roots)
9.9 99.1 GSM131105 Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
9.6 99.1 ArrayExpress Millenaar_A2_ETH_Rep2_ATH1 - - -
9.4 99.1 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.0 99.1 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
8.7 99.0 GSM184915 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
641.3	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
318.9	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
285.4	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
278.0	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
207.8	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
205.7	100.0	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
178.8	100.0	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
121.5	99.9	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
104.3	99.9	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
77.8	99.9	GSM128788	Somerville_1-11_stem-GH8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
48.3	99.8	GSM133989	Birnbaum_1-22_gl2-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
39.9	99.8	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
33.7	99.7	GSM184909	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
31.5	99.7	ArrayExpress	E-MEXP-715-raw-cel-1121836247	-	-	-
27.7	99.7	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.1	99.7	GSM128786	Somerville_1-9_stem-GC8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
25.5	99.7	GSM266665	Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.8	99.6	GSM142883	CW001_ATH1_A1.2-WestC-wsb	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
21.4	99.6	ArrayExpress	E-MEXP-715-raw-cel-1121835979	-	-	-
20.5	99.6	ArrayExpress	Millenaar_A2_ETH_Rep1_ATH1	-	-	-
20.2	99.6	ArrayExpress	E-MEXP-715-raw-cel-1121836005	-	-	-
20.1	99.6	ArrayExpress	E-MEXP-715-raw-cel-1121836113	-	-	-
19.5	99.6	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
18.1	99.5	ArrayExpress	Millenaar_A5_ETH_Rep3_ATH1	-	-	-
17.8	99.5	GSM184889	Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
16.9	99.5	GSM184908	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
15.9	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.6	99.5	ArrayExpress	E-MEXP-715-raw-cel-1121836087	-	-	-
15.4	99.5	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.1	99.4	GSM133992	Birnbaum_1-25_J0571-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
15.0	99.4	ArrayExpress	E-MEXP-715-raw-cel-1121836221	-	-	-
14.9	99.4	GSM133808	Diamond_A-1-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
14.3	99.4	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.6	99.4	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
13.6	99.4	ArrayExpress	E-MEXP-715-raw-cel-1121836361	-	-	-
13.3	99.4	GSM184907	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
13.2	99.4	GSM184895	Arabidopsis, root cells, cortex, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
13.1	99.4	GSM133814	Diamond_A-3-Diamo-met_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
12.9	99.3	GSM131559	ATGE_9_B	GSE5631	AtGenExpress: Developmental series (roots)
11.6	99.3	GSM131558	ATGE_9_A	GSE5631	AtGenExpress: Developmental series (roots)
11.6	99.3	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.6	99.3	GSM133991	Birnbaum_1-24_gl2-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
11.5	99.3	ArrayExpress	E-MEXP-715-raw-cel-1121836334	-	-	-
11.2	99.2	GSM133810	Diamond_A-3-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.1	99.2	GSM184897	Arabidopsis, root cells, cortex, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.0	99.2	GSM133811	Diamond_A-4-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.0	99.2	GSM142882	CW001_ATH1_A1.1-WestC-wsu	GSE6178	Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
11.0	99.2	ArrayExpress	E-MEXP-1468-raw-cel-1591138985	-	-	-
11.0	99.2	ArrayExpress	E-MEXP-1468-raw-cel-1591139018	-	-	-
10.9	99.2	GSM184896	Arabidopsis, root cells, cortex, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
10.8	99.2	GSM133973	Birnbaum_1-3_src5-3_Rep3_ATH1	GSE5749	A gene expression map of the Arabidopsis root
10.6	99.2	GSM128783	Somerville_1-6_flower-GH5_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
10.5	99.2	GSM133809	Diamond_A-2-Diamo-fum_SLD	GSE5735	Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.4	99.2	ArrayExpress	E-NASC-78-raw-cel-1463195219	-	-	-
10.4	99.2	GSM131560	ATGE_9_C	GSE5631	AtGenExpress: Developmental series (roots)
9.9	99.1	GSM131105	Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
9.6	99.1	ArrayExpress	Millenaar_A2_ETH_Rep2_ATH1	-	-	-
9.4	99.1	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.0	99.1	GSM133971	Birnbaum_1-1_src5-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
8.7	99.0	GSM184915	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt

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Gene ID	At1g44830
Gene name	AP2 domain-containing transcription factor TINY, putative
Functional description	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.