CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At1g29690

Gene name CAD1 (constitutively activated cell death 1)

Functional description Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
99.5 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273252 - - -
83.0 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
79.0 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
75.5 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273144 - - -
75.0 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
73.5 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
63.1 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
59.8 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
59.0 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
54.1 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
46.8 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
43.8 99.8 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
41.0 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
37.3 99.7 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
36.1 99.7 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
35.9 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.9 99.7 ArrayExpress E-NASC-76-raw-cel-1359879132 - - -
33.5 99.7 ArrayExpress E-MEXP-546-raw-cel-863289506 - - -
32.4 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
31.9 99.7 ArrayExpress E-MEXP-807-raw-cel-1173272948 - - -
30.5 99.7 GSM39203 Col_Chitin1 GSE2169 rre1 and rre2 mutants
30.4 99.7 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
30.1 99.7 GSM39205 Col_Chitin3 GSE2169 rre1 and rre2 mutants
30.1 99.7 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
29.9 99.7 ArrayExpress E-MEXP-546-raw-cel-863289476 - - -
27.6 99.7 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
26.5 99.7 ArrayExpress E-MEXP-546-raw-cel-863289450 - - -
26.2 99.7 ArrayExpress E-MEXP-546-raw-cel-863289404 - - -
26.0 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
25.3 99.6 ArrayExpress E-MEXP-547-raw-cel-863346376 - - -
23.2 99.6 ArrayExpress E-MEXP-547-raw-cel-863346430 - - -
23.0 99.6 ArrayExpress E-MEXP-1443-raw-cel-1581869745 - - -
23.0 99.6 ArrayExpress E-MEXP-1443-raw-cel-1581869921 - - -
22.9 99.6 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
22.6 99.6 GSM39206 Col_Chitin4 GSE2169 rre1 and rre2 mutants
22.4 99.6 ArrayExpress E-MEXP-546-raw-cel-863289532 - - -
21.7 99.6 GSM39204 Col_Chitin2 GSE2169 rre1 and rre2 mutants
21.2 99.6 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
21.1 99.6 ArrayExpress E-MEXP-1443-raw-cel-1581869863 - - -
20.6 99.6 ArrayExpress E-MEXP-547-raw-cel-863346457 - - -
20.5 99.6 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
20.2 99.6 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
20.0 99.6 ArrayExpress E-MEXP-98-raw-cel-320188804 - - -
19.6 99.6 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
19.4 99.6 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
18.6 99.5 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
18.6 99.5 ArrayExpress E-NASC-76-raw-cel-1359878951 - - -
18.5 99.5 ArrayExpress E-MEXP-1443-raw-cel-1581869803 - - -
17.3 99.5 ArrayExpress E-MEXP-547-raw-cel-863346403 - - -
16.3 99.5 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.3 99.5 GSM48124 Col_8mer3 GSE2538 Chitin Oligomer Experiment
16.3 99.5 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.1 99.5 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
15.8 99.5 ArrayExpress E-MEXP-98-raw-cel-320188859 - - -
15.5 99.5 GSM48125 Col_CSC1 GSE2538 Chitin Oligomer Experiment
15.5 99.5 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
15.4 99.5 GSM48126 Col_CSC2 GSE2538 Chitin Oligomer Experiment
15.4 99.5 ArrayExpress E-NASC-76-raw-cel-1359879028 - - -
14.9 99.4 ArrayExpress E-ATMX-28-raw-cel-1441104826 - - -
14.5 99.4 ArrayExpress E-ATMX-28-raw-cel-1441104835 - - -
14.3 99.4 ArrayExpress E-MEXP-98-raw-cel-320189079 - - -
14.3 99.4 ArrayExpress E-MEXP-546-raw-cel-863289424 - - -
14.3 99.4 GSM48122 Col_8mer1 GSE2538 Chitin Oligomer Experiment
14.3 99.4 ArrayExpress E-MEXP-81-raw-cel-295433164 - - -
13.3 99.4 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
12.1 99.3 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
11.9 99.3 GSM244454 Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
11.8 99.3 GSM131118 AtGen_B-4_1-4-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.6 99.3 GSM272992 flu over-tAPX 14-2, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
11.1 99.2 GSM48123 Col_8mer2 GSE2538 Chitin Oligomer Experiment
11.1 99.2 ArrayExpress E-MEXP-547-raw-cel-863346448 - - -
11.0 99.2 GSM131119 AtGen_B-5_1-5-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.0 99.2 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
10.4 99.2 ArrayExpress E-MEXP-547-raw-cel-863346421 - - -
10.1 99.2 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
9.7 99.1 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
9.6 99.1 ArrayExpress E-NASC-76-raw-cel-1359879106 - - -
9.5 99.1 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.4 99.1 GSM142855 MG001_ATH1_A8-Torres-3N3 GSE6176 Impact of Type III effectors on plant defense responses
9.2 99.1 GSM244452 Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
8.9 99.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.9 99.0 GSM131272 AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
99.5	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
83.0	99.9	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
79.0	99.9	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
75.5	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
75.0	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
73.5	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
63.1	99.8	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
59.8	99.8	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
59.0	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
54.1	99.8	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
46.8	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
43.8	99.8	GSM39211	RRE2_Chitin1	GSE2169	rre1 and rre2 mutants
41.0	99.8	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
37.3	99.7	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
36.1	99.7	GSM39196	RRE1_Chitin2	GSE2169	rre1 and rre2 mutants
35.9	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
33.9	99.7	ArrayExpress	E-NASC-76-raw-cel-1359879132	-	-	-
33.5	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289506	-	-	-
32.4	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
31.9	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
30.5	99.7	GSM39203	Col_Chitin1	GSE2169	rre1 and rre2 mutants
30.4	99.7	GSM39212	RRE2_Chitin2	GSE2169	rre1 and rre2 mutants
30.1	99.7	GSM39205	Col_Chitin3	GSE2169	rre1 and rre2 mutants
30.1	99.7	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
29.9	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289476	-	-	-
27.6	99.7	GSM142838	MG001_ATH1_A17-Torres-6N3	GSE6176	Impact of Type III effectors on plant defense responses
26.5	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289450	-	-	-
26.2	99.7	ArrayExpress	E-MEXP-546-raw-cel-863289404	-	-	-
26.0	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
25.3	99.6	ArrayExpress	E-MEXP-547-raw-cel-863346376	-	-	-
23.2	99.6	ArrayExpress	E-MEXP-547-raw-cel-863346430	-	-	-
23.0	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869745	-	-	-
23.0	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869921	-	-	-
22.9	99.6	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
22.6	99.6	GSM39206	Col_Chitin4	GSE2169	rre1 and rre2 mutants
22.4	99.6	ArrayExpress	E-MEXP-546-raw-cel-863289532	-	-	-
21.7	99.6	GSM39204	Col_Chitin2	GSE2169	rre1 and rre2 mutants
21.2	99.6	GSM39214	RRE2_Chitin4	GSE2169	rre1 and rre2 mutants
21.1	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869863	-	-	-
20.6	99.6	ArrayExpress	E-MEXP-547-raw-cel-863346457	-	-	-
20.5	99.6	GSM131132	AtGen_B-18_2-4-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
20.2	99.6	GSM131134	AtGen_B-20_2-6-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
20.0	99.6	ArrayExpress	E-MEXP-98-raw-cel-320188804	-	-	-
19.6	99.6	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
19.4	99.6	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
18.6	99.5	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
18.6	99.5	ArrayExpress	E-NASC-76-raw-cel-1359878951	-	-	-
18.5	99.5	ArrayExpress	E-MEXP-1443-raw-cel-1581869803	-	-	-
17.3	99.5	ArrayExpress	E-MEXP-547-raw-cel-863346403	-	-	-
16.3	99.5	GSM131146	AtGen_B-32_3-4-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.3	99.5	GSM48124	Col_8mer3	GSE2538	Chitin Oligomer Experiment
16.3	99.5	GSM131148	AtGen_B-34_3-6-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.1	99.5	GSM142839	MG001_ATH1_A18-Torres-6N6	GSE6176	Impact of Type III effectors on plant defense responses
15.8	99.5	ArrayExpress	E-MEXP-98-raw-cel-320188859	-	-	-
15.5	99.5	GSM48125	Col_CSC1	GSE2538	Chitin Oligomer Experiment
15.5	99.5	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
15.4	99.5	GSM48126	Col_CSC2	GSE2538	Chitin Oligomer Experiment
15.4	99.5	ArrayExpress	E-NASC-76-raw-cel-1359879028	-	-	-
14.9	99.4	ArrayExpress	E-ATMX-28-raw-cel-1441104826	-	-	-
14.5	99.4	ArrayExpress	E-ATMX-28-raw-cel-1441104835	-	-	-
14.3	99.4	ArrayExpress	E-MEXP-98-raw-cel-320189079	-	-	-
14.3	99.4	ArrayExpress	E-MEXP-546-raw-cel-863289424	-	-	-
14.3	99.4	GSM48122	Col_8mer1	GSE2538	Chitin Oligomer Experiment
14.3	99.4	ArrayExpress	E-MEXP-81-raw-cel-295433164	-	-	-
13.3	99.4	GSM131317	AtGen_6-3321_Saltstress-Roots-3.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.1	99.3	GSM142852	MG001_ATH1_A5-Torres-2N3	GSE6176	Impact of Type III effectors on plant defense responses
11.9	99.3	GSM244454	Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
11.8	99.3	GSM131118	AtGen_B-4_1-4-1_REP_1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.6	99.3	GSM272992	flu over-tAPX 14-2, biological rep2	GSE10812	Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
11.1	99.2	GSM48123	Col_8mer2	GSE2538	Chitin Oligomer Experiment
11.1	99.2	ArrayExpress	E-MEXP-547-raw-cel-863346448	-	-	-
11.0	99.2	GSM131119	AtGen_B-5_1-5-1_REP_1_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.0	99.2	GSM142829	GM001_ATH1_A11-Torres-5N3	GSE6176	Impact of Type III effectors on plant defense responses
10.4	99.2	ArrayExpress	E-MEXP-547-raw-cel-863346421	-	-	-
10.1	99.2	GSM142837	MG001_ATH1_A16-Torres-6N1	GSE6176	Impact of Type III effectors on plant defense responses
9.7	99.1	GSM142853	MG001_ATH1_A6-Torres-2N6	GSE6176	Impact of Type III effectors on plant defense responses
9.6	99.1	ArrayExpress	E-NASC-76-raw-cel-1359879106	-	-	-
9.5	99.1	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.4	99.1	GSM142855	MG001_ATH1_A8-Torres-3N3	GSE6176	Impact of Type III effectors on plant defense responses
9.2	99.1	GSM244452	Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2	GSE9674	Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
8.9	99.0	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.9	99.0	GSM131272	AtGen_6-1412_Cold(4°C)-Shoots-6.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)

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Gene ID	At1g29690
Gene name	CAD1 (constitutively activated cell death 1)
Functional description	Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.