CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At1g29340

Gene name PUB17 (PLANT U-BOX 17)

Functional description Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
74.0 99.9 ArrayExpress E-MEXP-807-raw-cel-1173273170 - - -
71.1 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.3 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273144 - - -
50.1 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273252 - - -
38.3 99.8 ArrayExpress E-MEXP-807-raw-cel-1173273060 - - -
35.9 99.7 ArrayExpress E-MEXP-1443-raw-cel-1581869863 - - -
34.3 99.7 ArrayExpress E-MEXP-807-raw-cel-1173273116 - - -
30.3 99.7 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
24.3 99.6 ArrayExpress E-MEXP-1443-raw-cel-1581869921 - - -
22.9 99.6 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
22.3 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.0 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4 99.6 ArrayExpress E-MEXP-807-raw-cel-1173273223 - - -
20.0 99.6 ArrayExpress E-MEXP-807-raw-cel-1173273196 - - -
17.3 99.5 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
17.3 99.5 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
16.9 99.5 ArrayExpress E-MEXP-807-raw-cel-1173273088 - - -
15.1 99.4 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.2 99.4 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.2 99.4 GSM152141 siz1-3 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
14.0 99.4 GSM152145 siz1-3 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
13.8 99.4 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
13.6 99.4 GSM339543 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5 GSE13469 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
13.1 99.4 GSM272992 flu over-tAPX 14-2, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
13.0 99.4 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
12.7 99.3 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4 99.3 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
12.2 99.3 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.8 99.3 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.0 99.2 GSM322556 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
10.9 99.2 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.5 99.2 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.5 99.2 ArrayExpress E-ATMX-30-raw-cel-1513696906 - - -
10.3 99.2 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2 99.2 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
10.2 99.2 ArrayExpress E-MEXP-807-raw-cel-1173272948 - - -
10.0 99.2 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
9.7 99.1 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
9.7 99.1 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.6 99.1 ArrayExpress E-MEXP-1443-raw-cel-1581869803 - - -
9.4 99.1 GSM39204 Col_Chitin2 GSE2169 rre1 and rre2 mutants
9.3 99.1 ArrayExpress E-MEXP-98-raw-cel-320188859 - - -
9.3 99.1 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.2 99.1 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.2 99.1 ArrayExpress E-MEXP-98-raw-cel-320188804 - - -
9.2 99.1 ArrayExpress E-MEXP-546-raw-cel-863289424 - - -
9.0 99.1 GSM131492 ATGE_101_A GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.0 99.1 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
8.9 99.0 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
8.9 99.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
8.9 99.0 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8 99.0 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
74.0	99.9	ArrayExpress	E-MEXP-807-raw-cel-1173273170	-	-	-
71.1	99.9	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.3	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273144	-	-	-
50.1	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273252	-	-	-
38.3	99.8	ArrayExpress	E-MEXP-807-raw-cel-1173273060	-	-	-
35.9	99.7	ArrayExpress	E-MEXP-1443-raw-cel-1581869863	-	-	-
34.3	99.7	ArrayExpress	E-MEXP-807-raw-cel-1173273116	-	-	-
30.3	99.7	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
24.3	99.6	ArrayExpress	E-MEXP-1443-raw-cel-1581869921	-	-	-
22.9	99.6	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
22.3	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.0	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4	99.6	ArrayExpress	E-MEXP-807-raw-cel-1173273223	-	-	-
20.0	99.6	ArrayExpress	E-MEXP-807-raw-cel-1173273196	-	-	-
17.3	99.5	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
17.3	99.5	GSM39197	RRE1_Chitin3	GSE2169	rre1 and rre2 mutants
16.9	99.5	ArrayExpress	E-MEXP-807-raw-cel-1173273088	-	-	-
15.1	99.4	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.2	99.4	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.2	99.4	GSM152141	siz1-3 drought 1	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
14.0	99.4	GSM152145	siz1-3 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
13.8	99.4	GSM39213	RRE2_Chitin3	GSE2169	rre1 and rre2 mutants
13.6	99.4	GSM339543	Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5	GSE13469	Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
13.1	99.4	GSM272992	flu over-tAPX 14-2, biological rep2	GSE10812	Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
13.0	99.4	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
12.7	99.3	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.4	99.3	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
12.2	99.3	GSM131147	AtGen_B-33_3-5-1_REP3_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
11.8	99.3	GSM142649	MC002_ATH1_A9.3-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.0	99.2	GSM322556	genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3	GSE12856	Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
10.9	99.2	GSM311295	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.5	99.2	GSM128662	Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.5	99.2	ArrayExpress	E-ATMX-30-raw-cel-1513696906	-	-	-
10.3	99.2	GSM142648	MC002_ATH1_A9.2-dubos-aah	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2	99.2	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
10.2	99.2	ArrayExpress	E-MEXP-807-raw-cel-1173272948	-	-	-
10.0	99.2	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
9.7	99.1	GSM39198	RRE1_Chitin4	GSE2169	rre1 and rre2 mutants
9.7	99.1	GSM131132	AtGen_B-18_2-4-1_REP2_ATH1	GSE5615	AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
9.6	99.1	ArrayExpress	E-MEXP-1443-raw-cel-1581869803	-	-	-
9.4	99.1	GSM39204	Col_Chitin2	GSE2169	rre1 and rre2 mutants
9.3	99.1	ArrayExpress	E-MEXP-98-raw-cel-320188859	-	-	-
9.3	99.1	GSM152139	Col-0 drought 3	GSE6583	Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
9.2	99.1	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.2	99.1	ArrayExpress	E-MEXP-98-raw-cel-320188804	-	-	-
9.2	99.1	ArrayExpress	E-MEXP-546-raw-cel-863289424	-	-	-
9.0	99.1	GSM131492	ATGE_101_A	GSE5629	AtGenExpress: Developmental series (seedlings and whole plants)
9.0	99.1	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
8.9	99.0	GSM39195	RRE1_Chitin1	GSE2169	rre1 and rre2 mutants
8.9	99.0	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
8.9	99.0	GSM142653	MC002_ATH1_A11.1-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8	99.0	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At1g29340
Gene name	PUB17 (PLANT U-BOX 17)
Functional description	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.