Specifically-expressed experiments

Gene ID At1g28380
Gene name NSL1 (necrotic spotted lesions 1)
Functional description This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.299.9ArrayExpressE-MEXP-807-raw-cel-1173273060---
83.099.9ArrayExpressE-MEXP-807-raw-cel-1173273116---
81.099.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
80.899.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
77.799.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
75.899.9ArrayExpressE-MEXP-807-raw-cel-1173273170---
75.799.9ArrayExpressE-MEXP-807-raw-cel-1173273223---
67.199.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
66.899.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
62.999.8ArrayExpressE-MEXP-807-raw-cel-1173273088---
60.799.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
50.699.8ArrayExpressE-MEXP-807-raw-cel-1173273144---
49.399.8ArrayExpressE-MEXP-807-raw-cel-1173273252---
38.699.8ArrayExpressE-MEXP-807-raw-cel-1173273196---
38.299.8ArrayExpressE-MEXP-807-raw-cel-1173272948---
36.399.7GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
36.299.7GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
28.399.7GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
23.399.6GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
22.899.6ArrayExpressE-MEXP-1443-raw-cel-1581869863---
18.499.5GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
18.499.5ArrayExpressE-MEXP-98-raw-cel-320188859---
16.999.5GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.499.5GSM131148AtGen_B-34_3-6-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
16.499.5ArrayExpressE-MEXP-98-raw-cel-320189024---
16.199.5GSM131132AtGen_B-18_2-4-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
14.899.4GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
14.899.4ArrayExpressE-NASC-76-raw-cel-1359878951---
14.499.4GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.399.4GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
14.299.4ArrayExpressE-NASC-76-raw-cel-1359879132---
13.999.4GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
13.999.4ArrayExpressE-MEXP-1443-raw-cel-1581869745---
13.399.4GSM131146AtGen_B-32_3-4-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
13.299.4GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
13.099.4ArrayExpressE-MEXP-98-raw-cel-320188804---
12.999.3GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
12.599.3GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
12.099.3GSM131134AtGen_B-20_2-6-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
11.699.3ArrayExpressE-MEXP-546-raw-cel-863289404---
11.499.3GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
11.499.3ArrayExpressE-MEXP-98-raw-cel-320189079---
11.399.3GSM131133AtGen_B-19_2-5-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
11.199.2ArrayExpressE-MEXP-546-raw-cel-863289450---
10.899.2GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
10.599.2GSM128683Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
10.599.2ArrayExpressE-MEXP-547-raw-cel-863346376---
10.499.2GSM131147AtGen_B-33_3-5-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
10.399.2ArrayExpressE-MEXP-1094-raw-cel-1379507313---
10.299.2ArrayExpressE-ATMX-28-raw-cel-1441104835---
10.199.2GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
10.099.2GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.099.2GSM131119AtGen_B-5_1-5-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
10.099.2ArrayExpressE-MEXP-1443-raw-cel-1581869921---
10.099.2GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.099.2GSM272992flu over-tAPX 14-2, biological rep2GSE10812Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leavesLink to GEO
9.699.1GSM27364lec1-1 Rosette LeafGSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
9.599.1GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.499.1GSM131118AtGen_B-4_1-4-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
9.499.1GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.299.1GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.299.1ArrayExpressE-NASC-76-raw-cel-1359879106---
9.199.1GSM142850MG001_ATH1_A3-Torres-1N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
8.999.0GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
8.899.0GSM39204Col_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
8.699.0ArrayExpressE-MEXP-547-raw-cel-863346403---



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