CoP: Co-expressed Biological Processes

Specifically-expressed experiments

Gene ID At1g27380

Gene name RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)

Functional description encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.

Click GSM ID or Assay name to show a list of genes that are specifically expressed in the GSM.

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
323.4 100.0 ArrayExpress E-MEXP-1451-raw-cel-1585200362 - - -
265.5 100.0 ArrayExpress E-MEXP-265-raw-cel-414618394 - - -
214.9 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
214.6 100.0 ArrayExpress E-MEXP-265-raw-cel-414618693 - - -
211.9 100.0 ArrayExpress E-MEXP-265-raw-cel-414618796 - - -
209.3 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
206.4 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
190.9 100.0 ArrayExpress E-MEXP-265-raw-cel-414618491 - - -
189.0 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
187.1 100.0 ArrayExpress E-MEXP-265-raw-cel-414618291 - - -
141.8 99.9 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
129.1 99.9 ArrayExpress E-MEXP-265-raw-cel-414618585 - - -
112.6 99.9 ArrayExpress E-MEXP-265-raw-cel-414617695 - - -
80.5 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
76.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
75.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.8 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
68.7 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.6 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.4 99.8 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
62.7 99.8 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
61.3 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
60.6 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4 99.8 ArrayExpress E-MEXP-1451-raw-cel-1585200330 - - -
58.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.4 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.1 99.8 GSM27362 WT Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
55.2 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.3 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.8 99.8 ArrayExpress E-MEXP-1451-raw-cel-1585200298 - - -
52.8 99.8 GSM131660 ATGE_28_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
51.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7 99.8 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
46.4 99.8 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
44.9 99.8 GSM133749 Turner_A-3-Turne-Mut-Base1_SLD GSE5729 Role of COV in vascular patterning
42.0 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.6 99.8 ArrayExpress E-MEXP-265-raw-cel-414617783 - - -
40.4 99.8 GSM131658 ATGE_28_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
38.9 99.8 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
37.0 99.7 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
36.9 99.7 ArrayExpress E-MEXP-285-raw-cel-440783213 - - -
36.8 99.7 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
36.4 99.7 GSM131659 ATGE_28_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
32.4 99.7 ArrayExpress E-MEXP-265-raw-cel-414617890 - - -
31.8 99.7 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.8 99.7 GSM133816 Yang_1-1_young-pod_Rep1_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
27.7 99.7 ArrayExpress E-MEXP-285-raw-cel-440783152 - - -
25.2 99.6 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
24.7 99.6 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
23.1 99.6 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
22.5 99.6 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
21.5 99.6 ArrayExpress E-MEXP-265-raw-cel-414619106 - - -
19.6 99.6 GSM128786 Somerville_1-9_stem-GC8_Rep2_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
17.2 99.5 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
15.1 99.4 GSM128785 Somerville_1-8_stem-GC7_Rep1_ATH1 GSE5533 Tissue Type Arrays of Columbia-0
13.0 99.4 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
11.2 99.2 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.9 99.2 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.5 99.1 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2 99.1 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.7 99.0 GSM142656 MC002_ATH1_A12.1-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
323.4	100.0	ArrayExpress	E-MEXP-1451-raw-cel-1585200362	-	-	-
265.5	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618394	-	-	-
214.9	100.0	GSM131656	ATGE_27_B	GSE5633	AtGenExpress: Developmental series (shoots and stems)
214.6	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618693	-	-	-
211.9	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618796	-	-	-
209.3	100.0	GSM133753	Turner_A-7-Turne-WT-Base1_SLD	GSE5729	Role of COV in vascular patterning
206.4	100.0	GSM131657	ATGE_27_C	GSE5633	AtGenExpress: Developmental series (shoots and stems)
190.9	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618491	-	-	-
189.0	100.0	GSM131655	ATGE_27_A	GSE5633	AtGenExpress: Developmental series (shoots and stems)
187.1	100.0	ArrayExpress	E-MEXP-265-raw-cel-414618291	-	-	-
141.8	99.9	GSM133754	Turner_A-8-Turne-WT-Base2_SLD	GSE5729	Role of COV in vascular patterning
129.1	99.9	ArrayExpress	E-MEXP-265-raw-cel-414618585	-	-	-
112.6	99.9	ArrayExpress	E-MEXP-265-raw-cel-414617695	-	-	-
80.5	99.9	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
76.5	99.9	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
75.2	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
73.8	99.9	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.8	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
68.7	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.6	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.4	99.8	GSM27366	lec1-1 Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
62.7	99.8	GSM142637	MC002_ATH1_A5.3-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
61.3	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
60.6	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4	99.8	ArrayExpress	E-MEXP-1451-raw-cel-1585200330	-	-	-
58.1	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
57.4	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.1	99.8	GSM27362	WT Stem	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
55.2	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.3	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.8	99.8	ArrayExpress	E-MEXP-1451-raw-cel-1585200298	-	-	-
52.8	99.8	GSM131660	ATGE_28_C2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
51.0	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.7	99.8	GSM133818	Yang_1-3_young-pod_Rep2_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
46.4	99.8	GSM142635	MC002_ATH1_A5.1-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
44.9	99.8	GSM133749	Turner_A-3-Turne-Mut-Base1_SLD	GSE5729	Role of COV in vascular patterning
42.0	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.6	99.8	ArrayExpress	E-MEXP-265-raw-cel-414617783	-	-	-
40.4	99.8	GSM131658	ATGE_28_A2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
38.9	99.8	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
37.0	99.7	GSM133750	Turner_A-4-Turne-Mut-Base2_SLD	GSE5729	Role of COV in vascular patterning
36.9	99.7	ArrayExpress	E-MEXP-285-raw-cel-440783213	-	-	-
36.8	99.7	GSM131688	ATGE_77_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
36.4	99.7	GSM131659	ATGE_28_B2	GSE5633	AtGenExpress: Developmental series (shoots and stems)
32.4	99.7	ArrayExpress	E-MEXP-265-raw-cel-414617890	-	-	-
31.8	99.7	GSM142636	MC002_ATH1_A5.2-dubos-5kx	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.8	99.7	GSM133816	Yang_1-1_young-pod_Rep1_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
27.7	99.7	ArrayExpress	E-MEXP-285-raw-cel-440783152	-	-	-
25.2	99.6	GSM184900	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
24.7	99.6	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
23.1	99.6	GSM131689	ATGE_77_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
22.5	99.6	GSM131690	ATGE_77_F	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
21.5	99.6	ArrayExpress	E-MEXP-265-raw-cel-414619106	-	-	-
19.6	99.6	GSM128786	Somerville_1-9_stem-GC8_Rep2_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
17.2	99.5	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
15.1	99.4	GSM128785	Somerville_1-8_stem-GC7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
13.0	99.4	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
11.2	99.2	GSM266673	Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.9	99.2	GSM266677	Arabidopsis, root cells, stele, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.5	99.1	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2	99.1	GSM266674	Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.7	99.0	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

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Gene ID	At1g27380
Gene name	RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)
Functional description	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.